miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00731;mir-155;AADN02010688.1/48715-48779 9031:Gallus gallus
(chicken)
Length = 65
Score = 103 bits (52), Expect = 3e-22
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 8 ttgttaatgctaatcgtgataggggtttttacctatgactgactcctacacgttagcatt 67
|||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||
Sbjct: 1 ttgttaatgctaatcgtgataggggtttttacctctgaatgactcctacatgttagcatt 60
Query: 68 aaca 71
||||
Sbjct: 61 aaca 64
>RF00731;mir-155;AY096003.1/159-223 10090:Mus musculus (house
mouse)
Length = 65
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 9 tgttaatgctaatcgtgataggggtttttacctatgactgactcctacacgttagcatta 68
||||||||||||| |||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 2 tgttaatgctaattgtgataggggttttggcctctgactgactcctacctgttagcatta 61
Query: 69 aca 71
|||
Sbjct: 62 aca 64
>RF00731;mir-155;ABRQ01311671.1/11595-11658 9813:Procavia capensis
(cape rock hyrax)
Length = 64
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggtttttacctatgactgactcctacacgttagcatta 68
||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtttttgcct-caactgactcctacatgttagcatta 60
>RF00731;mir-155;AAGU02298634.1/113-176 9785:Loxodonta africana
(African savanna elephant)
Length = 64
Score = 65.9 bits (33), Expect = 6e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 9 tgttaatgctaatcgtgataggggtttttacct 41
|||||||||||||||||||||||||||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtttttacct 34
>RF00731;mir-155;AAFR03036553.1/2910-2839 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 8 ttgttaatgctaatcgtgataggggttttt 37
||||||||||||||||||||||||||||||
Sbjct: 1 ttgttaatgctaatcgtgataggggttttt 30
>RF00731;mir-155;AANH01000396.1/166544-166481 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gttaatgctaatcgtgataggggttttt 37
||||||||||||||||||||||||||||
Sbjct: 3 gttaatgctaatcgtgataggggttttt 30
>RF00731;mir-155;AAPN01114009.1/559-624 9258:Ornithorhynchus
anatinus (platypus)
Length = 66
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gttaatgctaatcgtgataggggtttt 36
|||||||||||||||||||||||||||
Sbjct: 3 gttaatgctaatcgtgataggggtttt 29
>RF00731;mir-155;BAAE01057424.1/197-134 8090:Oryzias latipes
(Japanese medaka)
Length = 64
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tgttaatgctaatcgtgataggggtt 34
||||||||||||||||||||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;AAWZ01036341.1/34181-34117 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 50.1 bits (25), Expect = 4e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggtttttacctatgactgactcctacacgttagcatt 67
||||||||||||||||| || |||||| || || |||||||||||| ||| |||||
Sbjct: 4 ttaatgctaatcgtgatgggagtttttgtctctggctgactcctacatgttggcatt 60
>RF00731;mir-155;CU571081.7/40496-40433 7955:Danio rerio
(zebrafish)
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggttt 35
|||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggttt 28
>RF00731;mir-155;CAAE01014581.1/3640492-3640429 99883:Tetraodon
nigroviridis
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttaatgctaatcgtgataggggtt 34
|||||||||||||||||||||||||
Sbjct: 3 gttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;CAAB01005608.1/1273-1335 31033:Takifugu rubripes
Length = 63
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttaatgctaatcgtgataggggtt 34
|||||||||||||||||||||||||
Sbjct: 3 gttaatgctaatcgtgataggggtt 27
