miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00076;mir-181;ABQF01033784.1/94537-94612 59729:Taeniopygia
guttata
Length = 76
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgt 60
Query: 63 tgattgtaccc 73
|||||||||||
Sbjct: 61 tgattgtaccc 71
>RF00076;mir-181;AAWZ01041904.1/21191-21117 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 83.8 bits (42), Expect = 3e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgt 62
|||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttggaatcga-gagcaaaccatcgaccgt 59
Query: 63 tgattgtacc 72
||| ||||||
Sbjct: 60 tgactgtacc 69
>RF00076;mir-181;AAVX01524458.1/119-46 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 79.8 bits (40), Expect = 4e-15
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgt 62
||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttgggatttagatg--aaccatcgaccgt 58
Query: 63 tgattgtaccc 73
||| |||||||
Sbjct: 59 tgactgtaccc 69
>RF00076;mir-181;AADN02026326.1/5940-5866 9031:Gallus gallus
(chicken)
Length = 75
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/71 (90%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagtttg-gaattaaagtgaaaaccatcgaccg 61
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttgagaactaa--gaaaaaccatcgaccg 58
Query: 62 ttgattgtacc 72
|||| ||||||
Sbjct: 59 ttgactgtacc 69
>RF00076;mir-181;CAAK05046427.1/2246-2169 7955:Danio rerio
(zebrafish)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/72 (88%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 5 tcagtgaacattcaacgctgtcggtgagtttggaattaaagtg---aaaaccatcgaccg 61
||||||||||||||||||||||||||||||| || |||| | ||||||||||||||
Sbjct: 3 tcagtgaacattcaacgctgtcggtgagttt-gagctaaatggaaaaaaaccatcgaccg 61
Query: 62 ttgattgtaccc 73
||||||||||||
Sbjct: 62 ttgattgtaccc 73
>RF00076;mir-181;AAVX01060902.1/6914-6990 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagtttg 36
||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAFR03041358.1/50589-50664 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 65.9 bits (33), Expect = 6e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagttt 35
|||||||||||||||||||||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;ABRO01503714.1/705-629 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 63.9 bits (32), Expect = 2e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagttt-ggaattaaagtgaaaaccatcgaccgttgattg 68
|||||||||||||||||||||||||| ||||||||| |||||| |||||||||| ||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgggaattaaaaaagaaaccaccgaccgttgactg 67
Query: 69 tacc 72
||||
Sbjct: 68 tacc 71
>RF00076;mir-181;BAAE01064819.1/183-106 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/69 (88%), Gaps = 4/69 (5%)
Strand = Plus / Plus
Query: 8 gtgaacattcaacgctgtcggtgagtttggaattaaagt---gaaaaccatcgaccgttg 64
|||||||||||||||||||||||||||| || |||| | ||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt-gagctaaattgaagaaaaccatcgaccgttg 64
Query: 65 attgtaccc 73
| |||||||
Sbjct: 65 actgtaccc 73
>RF00076;mir-181;AANH01003633.1/162880-162804 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 6 cagtgaacattcaacgctgtcggtgagttt 35
||||||||||||||||||||||||||||||
Sbjct: 4 cagtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;ABRQ01199017.1/7675-7601 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 tgaacattcaacgctgtcggtgagtttgg 37
|||||||||||||||||||||||||||||
Sbjct: 8 tgaacattcaacgctgtcggtgagtttgg 36
>RF00076;mir-181;CAAE01007899.1/3116-3043 99883:Tetraodon
nigroviridis
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 8 gtgaacattcaacgctgtcggtgagtttg 36
|||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AANH01010005.1/225761-225835 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 8 gtgaacattcaacgctgtcggtgagtttg 36
|||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAVX01605662.1/457-382 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 4 ttcagtgaacattcaacgctgtcggtgagtttg 36
||||| |||||||||||||||||||||||||||
Sbjct: 2 ttcagggaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAPN01204145.1/856-780 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgg 37
||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;ABRR01288494.1/77-2 30538:Lama pacos (alpaca)
Length = 76
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgg 37
||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;BX649502.4/41327-41254 7955:Danio rerio
(zebrafish)
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tcagtgaacattcaacgctgtcggtgagtttg 36
|||| |||||||||||||||||||||||||||
Sbjct: 3 tcagagaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;CU914488.12/799-875 7955:Danio rerio (zebrafish)
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 gtgaacattcaacgctgtcggtgagttt 35
||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAE01007782.1/1794-1718 99883:Tetraodon
nigroviridis
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgg 37
||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;AANH01005494.1/52551-52630 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 gtgaacattcaacgctgtcggtgagttt 35
||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;BAAE01046132.1/387-313 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgttgattgt 69
|||||||||||||||||||||||||| | || | | |||||||||||||||||| |||
Sbjct: 8 gaacattcaacgctgtcggtgagttt-gtgctacaatcaaaaccatcgaccgttgactgt 66
Query: 70 accc 73
||||
Sbjct: 67 accc 70
>RF00076;mir-181;AAPN01414527.1/5237-5163 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttg 36
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABQO010301058.1/1056-1132 9315:Macropus eugenii
(tammar wallaby)
Length = 77
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttg 36
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABPN01054789.1/181-255 163638:Rhamphochromis esox
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttg 36
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AANH01011358.1/4650-4577 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttg 36
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01247698.1/2692-2765 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttg 36
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01266276.1/154-232 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 aacattcaacgctgtcggtgagtttgg 37
|||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;CR407590.7/46720-46647 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagttt 35
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01002581.1/17658-17586 31033:Takifugu
rubripes
Length = 73
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagttt 35
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAWZ01014044.1/10482-10407 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 aacattcaacgctgtcggtgagttt 35
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01009059.1/35-115 31033:Takifugu rubripes
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 aacattcaacgctgtcggtgagttt 35
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01002295.1/30499-30571 31033:Takifugu
rubripes
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttg 36
|||||||||| ||||||||||||||||
Sbjct: 8 gaacattcaamgctgtcggtgagtttg 34
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 aaaccatcgaccgttgattgtaccc 73
||||||||||||||||| |||||||
Sbjct: 44 aaaccatcgaccgttgactgtaccc 68
>RF00076;mir-181;AAIY01317332.1/8-77 9371:Echinops telfairi (small
Madagascar hedgehog)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 5 tcagtgaacattcaacgctgtcggtgagtt 34
||||||||||| ||||||||||||||||||
Sbjct: 3 tcagtgaacat-caacgctgtcggtgagtt 31
