miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EF203471.1/100-300 3712:Brassica oleracea
Length = 201
Score = 375 bits (189), Expect = e-103
Identities = 192/193 (99%)
Strand = Plus / Plus
Query: 20 tagatatagaaggagattctttcagtccagtcatggatagaacaagaagagggtagaaac 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagatatagaaggagattctttcagtccagtcatggatagaacaagaagagggtagaaac 60
Query: 80 atctgccgactcatccatccaaacacttctggtaaaaagaaaagagattttataccacag 139
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 61 atctgccgactcatccatccaaacacttctggtaaaaagaaaatagattttataccacag 120
Query: 140 tggctgtgtgaatgatgcgggagatgttttcatctctctttatctgtgtttggactgaag 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggctgtgtgaatgatgcgggagatgttttcatctctctttatctgtgtttggactgaag 180
Query: 200 ggagctccttctt 212
|||||||||||||
Sbjct: 181 ggagctccttctt 193
>RF00638;MIR159;EU549334.1/124-324 3702:Arabidopsis thaliana (thale
cress)
Length = 201
Score = 214 bits (108), Expect = 4e-55
Identities = 176/195 (90%), Gaps = 4/195 (2%)
Strand = Plus / Plus
Query: 20 tagatatagaaggagattctttcagtccagtcatggatagaacaagaagagggtagaaac 79
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
Query: 80 atctgccgactcatccatccaaacacttctggtaaaaagaaaaga-gattttataccaca 138
||||||||||||||||||||||||||| |||| | ||||| || | |||| ||| ||
Sbjct: 61 atctgccgactcatccatccaaacactcgtggt--agagaaacgataaatttaaaccgca 118
Query: 139 gtggctgtgtgaatgatgcgggagat-gttttcatctctctttatctgtgtttggactga 197
||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactga 178
Query: 198 agggagctccttctt 212
|||||||||||||||
Sbjct: 179 agggagctccttctt 193
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 73.8 bits (37), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 143 ctgtgtgaatgatgcgggagatgtttt--catctctctttatctgtgtttggactgaagg 200
|||| ||||||||||||||||| |||| |||| ||||| |||||| ||||||||||||
Sbjct: 113 ctgtatgaatgatgcgggagatatttttacatccatctttctctgtgcttggactgaagg 172
Query: 201 gagctccttctt 212
||||||||||||
Sbjct: 173 gagctccttctt 184
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 65.9 bits (33), Expect = 2e-10
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 144 tgtgtgaatgatgcgggagatgttttcatc-tctctttatctgtgtttggactgaaggga 202
||||||||||||||||||||| ||||||| ||| || |||||| ||||||||||||||
Sbjct: 121 tgtgtgaatgatgcgggagataatttcatcttcttcttgtctgtgcttggactgaaggga 180
Query: 203 gctcc 207
|||||
Sbjct: 181 gctcc 185
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 63.9 bits (32), Expect = 9e-10
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 148 tgaatgatgcgggagatgtttt--catctctctttatctgtgtttggactgaagggagct 205
||||||||||||||||| ||| |||| |||||| || ||| |||||||||||||||||
Sbjct: 129 tgaatgatgcgggagataattttgcatccctctttttccgtgcttggactgaagggagct 188
Query: 206 ccttctt 212
|||||||
Sbjct: 189 ccttctt 195
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 61.9 bits (31), Expect = 4e-09
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 144 tgtgtgaatgatgcgggagat--gttttcat-ctctctttatctgtgtttggactgaagg 200
||||||||||||||||||||| ||| ||| ||||| || |||||| ||||||||||||
Sbjct: 127 tgtgtgaatgatgcgggagataattttccatcctctccttttctgtgcttggactgaagg 186
Query: 201 gagctccttc 210
||||||||||
Sbjct: 187 gagctccttc 196
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 61.9 bits (31), Expect = 4e-09
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 144 tgtgtgaatgatgcgggagatgtttt--catctc-tctttatctgtgtttggactgaagg 200
||||||||||||||||||||| ||| |||| | ||||| |||||| ||||||||||||
Sbjct: 125 tgtgtgaatgatgcgggagataattttacatcccctctttttctgtgcttggactgaagg 184
Query: 201 gagctccttc 210
||||||||||
Sbjct: 185 gagctccttc 194
>RF00638;MIR159;AP006665.1/46415-46593 34305:Lotus japonicus
Length = 179
Score = 54.0 bits (27), Expect = 9e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 186 tgtttggactgaagggagctccttctt 212
|||||||||||||||||||||||||||
Sbjct: 145 tgtttggactgaagggagctccttctt 171
>RF00638;MIR159;AASG02006722.1/5300-5498 3988:Ricinus communis
(castor bean)
Length = 199
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 189 ttggactgaagggagctccttctt 212
||||||||||||||||||||||||
Sbjct: 168 ttggactgaagggagctccttctt 191
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 tctgtgtttggactgaagggagctcc 207
|||||| |||||||||||||||||||
Sbjct: 146 tctgtgcttggactgaagggagctcc 171
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 tctgtgtttggactgaagggagctcc 207
|||||| |||||||||||||||||||
Sbjct: 162 tctgtgcttggactgaagggagctcc 187
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 tctgtgtttggactgaagggagctcc 207
|||||| |||||||||||||||||||
Sbjct: 155 tctgtgcttggactgaagggagctcc 180
