miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 11 ctttttcctatgcatatacttctttgagaataaaatctaaagaggcgtagggcatgggaa 70
Query: 61 aatggggc 68
||||||||
Sbjct: 71 aatggggc 78
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||||||||||||| || |||||||||| |||| |||||||||
Sbjct: 11 ctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcatgggaa 70
Query: 61 aatggggc 68
||||||||
Sbjct: 71 aatggggc 78
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 11 ctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatgggaa 70
Query: 61 aatgg 65
|||||
Sbjct: 71 aatgg 75
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 75.8 bits (38), Expect = 6e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
|||||||||||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct: 11 ctttttcctatgcatatacttctttgaggatctggcctaaagaggtatatggcatgggaa 70
Query: 61 aatggggcaa 70
||||| ||||
Sbjct: 71 aatggagcaa 80
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 11 ctttttcctatgcatatacttctttgaagatctggcctaaagaggtatagggcatgggaa 70
Query: 61 aatggggc 68
|| |||||
Sbjct: 71 aacggggc 78
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 65.9 bits (33), Expect = 6e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||| ||||||| || || | ||||| || ||||||||||||||
Sbjct: 11 ctttttcctatgcatatacctctttgaaaaatgaatgtaaaggggcatagggcatgggaa 70
Query: 61 aatgg 65
|||||
Sbjct: 71 aatgg 75
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 63.9 bits (32), Expect = 2e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||||||||||| | | | |||||||| ||| ||||||||||
Sbjct: 11 ctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggcatgggaa 70
Query: 61 aatggggc 68
||||||||
Sbjct: 71 aatggggc 78
>RF00705;mir-202;AAIY01420185.1/327-241 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgag 28
||||||||||||||||||||||||||||
Sbjct: 11 ctttttcctatgcatatacttctttgag 38
