miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00646;mir-204;AADN02066720.1/35863-35790 9031:Gallus gallus
(chicken)
Length = 74
Score = 131 bits (66), Expect = 2e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 2 cctgtgagcttccctttgtcatcctatgcctgagcgatgcctggaggctgggacggccaa 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 cctgtgagcttccctttgtcatcctatgcctgagcgatgcctggaggctgggacggtgaa 60
Query: 62 gggaggcccacggg 75
||||||||||||||
Sbjct: 61 gggaggcccacggg 74
>RF00646;mir-204;AAPN01089717.1/13112-13213 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 tgagcttccctttgtcatcctatgcctg 33
||||||||||||||||||||||||||||
Sbjct: 22 tgagcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAFR03022736.1/24229-24330 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 cctgtgagcttccctttgtcatcctatgcctg 33
|||||| |||||||||||||||||||||||||
Sbjct: 18 cctgtgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAWZ01036299.1/27929-27828 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 cctgtgagcttccctttgtcatcctatgcctg 33
|||||| |||||||||||||||||||||||||
Sbjct: 18 cctgtgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AADN02040397.1/21108-21007 9031:Gallus gallus
(chicken)
Length = 102
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 cctgtgagcttccctttgtcatcctatgcctg 33
|||||| |||||||||||||||||||||||||
Sbjct: 18 cctgtgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;CAAE01014555.1/947630-947730 99883:Tetraodon
nigroviridis
Length = 101
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 cctgtgagcttccctttgtcatcctatgcctg 33
|||||| |||||||||||||||||||||||||
Sbjct: 18 cctgtgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;BAAE01064700.1/3191-3291 8090:Oryzias latipes
(Japanese medaka)
Length = 101
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 cctgtgagcttccctttgtcatcctatgcctg 33
|||||| |||||||||||||||||||||||||
Sbjct: 18 cctgtgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAFR03028287.1/51900-52003 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctgag 35
||||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctgag 51
>RF00646;mir-204;AC187999.1/39408-39305 9031:Gallus gallus
(chicken)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctgag 35
||||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctgag 51
>RF00646;mir-204;AAVX01052255.1/1202-1305 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 gcttccctttgtcatcctatgcctga 34
||||||||||||||||||||||||||
Sbjct: 25 gcttccctttgtcatcctatgcctga 50
>RF00646;mir-204;AANH01001574.1/139065-138965 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 101
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcttccctttgtcatcctatgcctg 33
|||||||||||||||||||||||||
Sbjct: 25 gcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;BAAE01000360.1/4392-4495 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcttccctttgtcatcctatgcctg 33
|||||||||||||||||||||||||
Sbjct: 25 gcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;BX323080.10/77917-77816 7955:Danio rerio
(zebrafish)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctg 33
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;ABPM01009536.1/476-373 106582:Maylandia zebra
(zebra mbuna)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctg 33
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AANH01001880.1/194334-194437 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctg 33
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAVX01164390.1/969-1070 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 2 cctgtgagcttccctttgtcatcctatgcctg 33
|||||| | |||||||||||||||||||||||
Sbjct: 18 cctgtgggtttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAGV020630976.1/4916-5016 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 cctgtgagcttccctttgtcatcctatgcct 32
|||||| |||||||||||||||||| |||||
Sbjct: 18 cctgtgggcttccctttgtcatcctttgcct 48
>RF00646;mir-204;AAHY01062369.1/281-180 10090:Mus musculus (house
mouse)
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 cctgtgagcttccctttgtcatcctatgcct 32
|||||| |||||||||||||||||| |||||
Sbjct: 18 cctgtgggcttccctttgtcatcctttgcct 48
>RF00646;mir-204;ABRQ01444608.1/1068-1169 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 cctgtgagcttccctttgtcatcctatgcct 32
|||||| |||||||||||||||||| |||||
Sbjct: 18 cctgtgggcttccctttgtcatcctttgcct 48
>RF00646;mir-204;CR450827.5/52029-51927 7955:Danio rerio
(zebrafish)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccctttgtcatcctatgcctg 33
|||||||||||||||||||||||
Sbjct: 28 ttccctttgtcatcctatgcctg 50
