miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00656;mir-205;ABQF01054068.1/102-203 59729:Taeniopygia guttata
Length = 102
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 gccttcctggtgcccttcattccaccggaatctgtcgatgcagaacccggatttcagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 gccttcctggtgcccttcattccaccggaatctgtcgatgcagaacccggatttcagtga 75
Query: 61 aatgaagcccctcagaaaggc 81
|||||||||||||||||||||
Sbjct: 76 aatgaagcccctcagaaaggc 96
>RF00656;mir-205;AADN02039786.1/62073-62174 9031:Gallus gallus
(chicken)
Length = 102
Score = 105 bits (53), Expect = 8e-23
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 1 gccttcctggtgcccttcattccaccggaatctgtcgatgcagaacccggatttcagtga 60
||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct: 16 gccttcctgatgcccttcattccaccggaatctgtcagtgcagaaaccagatttcagtga 75
Query: 61 aatgaagcccctcagaaaggc 81
|||||||||| ||||| ||||
Sbjct: 76 aatgaagcccatcagagaggc 96
>RF00656;mir-205;AAWZ01025260.1/79793-79893 28377:Anolis
carolinensis (green anole)
Length = 101
Score = 75.8 bits (38), Expect = 7e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 9 ggtgcccttcattccaccggaatctgtcgatgcagaacccggatttcagtgaaatgaagc 68
|||||||||||||||||||||||||||| ||| || ||||||||| ||||||||||||
Sbjct: 23 ggtgcccttcattccaccggaatctgtcaccgcaaaaaccggatttctgtgaaatgaagc 82
Query: 69 cc 70
||
Sbjct: 83 cc 84
>RF00656;mir-205;AAVX01185491.1/730-833 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 56.0 bits (28), Expect = 7e-08
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 11 tgcccttcattccaccggaatctgtcgatgcag-aacccggatttcagtgaaatga 65
||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct: 26 tgcccttcattccaccggaatctgtactggcagaaatccggatttcagtgaaatga 81
