miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00654;mir-216;AADN02046841.1/28673-28585 9031:Gallus gallus
(chicken)
Length = 89
Score = 133 bits (67), Expect = 3e-31
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 acagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacct 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 acagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacct 65
Query: 61 gtagagattct 71
|||||||||||
Sbjct: 66 gtagagattct 76
>RF00654;mir-216;AAPN01112677.1/19396-19484 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 75.8 bits (38), Expect = 6e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
||||||||||||||||||| ||||| |||| |||| |||||||| ||||||||||||
Sbjct: 7 cagactgggaaatctctgctggcaaatgtggtgtcacggtagcaatcgcacaattacctg 66
Query: 62 tagagattct 71
||||||||||
Sbjct: 67 tagagattct 76
>RF00654;mir-216;AAFR03002982.1/16332-16244 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 75.8 bits (38), Expect = 6e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
||||||||||||||||||||||||| |||| |||| ||||| ||| |||||||||| |
Sbjct: 7 cagactgggaaatctctgcaggcaaatgtggtgtcgctatagttatcacacaattacccg 66
Query: 62 tagagattct 71
||||||||||
Sbjct: 67 tagagattct 76
>RF00654;mir-216;BX284627.4/32714-32802 10090:Mus musculus (house
mouse)
Length = 89
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
||||||||||||||||||||||||| ||||||||| | || || | |||| |||||||
Sbjct: 7 cagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaaccacacacttacctg 66
Query: 62 tagagattct 71
||||||||||
Sbjct: 67 tagagattct 76
>RF00654;mir-216;AAWZ01022334.1/1559-1470 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 63.9 bits (32), Expect = 2e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 acagactgggaaatctctgcaggcaagtgtgatgtcttta-tagcaatctcacaattacc 59
|||||||| ||||||||||||||||| ||||||||||| | |||||||||||| |||||
Sbjct: 6 acagactgagaaatctctgcaggcaaatgtgatgtcttgaccagcaatctcacagttacc 65
>RF00654;mir-216;ABRQ01364800.1/1509-1421 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 61.9 bits (31), Expect = 9e-10
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
|||||||| |||||||||||||||| ||||||||| | | || || | |||| |||||||
Sbjct: 7 cagactggaaaatctctgcaggcaaatgtgatgtcatgaaagaaaccacacacttacctg 66
Query: 62 tagagat 68
|||||||
Sbjct: 67 tagagat 73
>RF00654;mir-216;ABRO01106143.1/1589-1501 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtc 36
|||||||| |||||||||||||||| |||||||||
Sbjct: 7 cagactggaaaatctctgcaggcaaatgtgatgtc 41
>RF00654;mir-216;AAKN02040735.1/24209-24296 10141:Cavia porcellus
(domestic guinea pig)
Length = 88
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtc 36
|||||||| |||||||||||||||| |||||||||
Sbjct: 7 cagactggaaaatctctgcaggcaaatgtgatgtc 41
>RF00654;mir-216;AAIY01782907.1/856-768 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 89
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtga 32
||||||||||||||||||||||||| |||||
Sbjct: 7 cagactgggaaatctctgcaggcaaatgtga 37
>RF00654;mir-216;AALT01617623.1/4047-4135 42254:Sorex araneus
(European shrew)
Length = 89
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 3 agactgggaaatctctgcaggcaagtgtgatgtc 36
||||||| |||||||||||||||| |||||||||
Sbjct: 8 agactggaaaatctctgcaggcaaatgtgatgtc 41
>RF00654;mir-216;BX321898.29/72434-72349 7955:Danio rerio
(zebrafish)
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 gactgggaaatctctgcaggcaagtgtgatgt 35
||||||| ||||||||||||||| ||||||||
Sbjct: 9 gactgggtaatctctgcaggcaactgtgatgt 40
>RF00654;mir-216;AANH01005109.1/23387-23300 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 gactgggaaatctctgcaggcaagtgtgatg 34
||||||| ||||||||||||||| |||||||
Sbjct: 9 gactgggtaatctctgcaggcaactgtgatg 39
>RF00654;mir-216;BAAF04050285.1/958-872 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 gactgggaaatctctgcaggcaagtgtgatg 34
||||||| ||||||||||||||| |||||||
Sbjct: 9 gactgggtaatctctgcaggcaactgtgatg 39
>RF00654;mir-216;AACT01058314.1/9825-9745 51511:Ciona savignyi
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 aatctctgcaggcaagtgtgatgtc 36
||||||||||||||| |||||||||
Sbjct: 17 aatctctgcaggcaactgtgatgtc 41
