miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00255;mir-218;AADN02015265.1/7283-7378 9031:Gallus gallus
(chicken)
Length = 96
Score = 176 bits (89), Expect = 4e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 agattttctgttgtgcttgatctaaccatgtggttgtgaggtatgagtaaaacatggttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 agattttctgttgtgcttgatctaaccatgtggttgtgaggtatgagtaaaacatggttc 67
Query: 61 tgtcaagcaccatggaacgtcacgcagct 89
|||||||||||||||||||||||||||||
Sbjct: 68 tgtcaagcaccatggaacgtcacgcagct 96
>RF00255;mir-218;AAVX01277185.1/1303-1208 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 117 bits (59), Expect = 3e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 10 gttgtgcttgatctaaccatgtggttgtgaggtatgagtaaaacatggttctgtcaagca 69
||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 17 gttgtgcttgatctaaccatgtggttgcaaggtacgaataaaacatggttctgtcaagca 76
Query: 70 ccatggaacgtcacg 84
|||||||||||||||
Sbjct: 77 ccatggaacgtcacg 91
>RF00255;mir-218;AAVX01056473.1/1147-1242 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 105 bits (53), Expect = 1e-22
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 1 agattttctgttgtgcttgatctaaccatgtggttgtgaggtatgagtaaaacatggttc 60
|||| ||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 8 agatgttctgttgtgcttgatctaaccatgtgcttccaaggtatgagtaaaacatggttt 67
Query: 61 tgtcaagcaccatggaacgtc 81
||||||||||||||| |||||
Sbjct: 68 tgtcaagcaccatgggacgtc 88
>RF00255;mir-218;AANH01008177.1/992-1091 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 46 agtaaaacatggttctgtcaagcaccatggaacg 79
||||||||||||||||||||||||||||||||||
Sbjct: 56 agtaaaacatggttctgtcaagcaccatggaacg 89
>RF00255;mir-218;CU550699.5/12753-12848 7955:Danio rerio
(zebrafish)
Length = 96
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggttgtgaggtatgagtaaaacatggttctgtcaagcac 70
|||||||||||||||||||||||||| | || ||| |||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggttgcagactcagactaatacatggttctgtcaagcac 77
Query: 71 catggaa 77
|||||||
Sbjct: 78 catggaa 84
>RF00255;mir-218;CAAB01001792.1/26731-26830 31033:Takifugu
rubripes
Length = 100
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 aacatggttctgtcaagcaccatggaacg 79
|||||||||||||||||||||||||||||
Sbjct: 61 aacatggttctgtcaagcaccatggaacg 89
>RF00255;mir-218;BAAE01009772.1/4377-4476 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 aacatggttctgtcaagcaccatggaacg 79
|||||||||||||||||||||||||||||
Sbjct: 62 aacatggttctgtcaagcaccatggaacg 90
>RF00255;mir-218;AADN02035923.1/118816-118721 9031:Gallus gallus
(chicken)
Length = 96
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 aacatggttctgtcaagcaccatggaa 77
|||||||||||||||||||||||||||
Sbjct: 58 aacatggttctgtcaagcaccatggaa 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggt 34
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;AAPN01020455.1/68716-68811 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggt 34
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 aacatggttctgtcaagcaccatggaa 77
|||||||||||||||||||||| ||||
Sbjct: 58 aacatggttctgtcaagcaccacggaa 84
>RF00255;mir-218;ABRQ01081918.1/2024-2119 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggt 34
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;ABRO01284271.1/1059-1152 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 aaacatggttctgtcaagcacc 71
||||||||||||||||||||||
Sbjct: 55 aaacatggttctgtcaagcacc 76
>RF00255;mir-218;CAAB01001870.1/27610-27514 31033:Takifugu
rubripes
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;BAAF04054903.1/5141-5043 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;BX323583.36/54354-54450 7955:Danio rerio
(zebrafish)
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtg 32
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
