miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00651;mir-221;AADN02010981.1/2588-2657 9031:Gallus gallus
(chicken)
Length = 70
Score = 129 bits (65), Expect = 5e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 65
Query: 61 ttcca 65
|||||
Sbjct: 66 ttcca 70
>RF00651;mir-221;AALT01657316.1/439-370 42254:Sorex araneus
(European shrew)
Length = 70
Score = 85.7 bits (43), Expect = 7e-17
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 60
|||||||| ||||||||||||||||| ||| || | ||||||||||||||||||||||||
Sbjct: 6 acctggcacacaatgtagatttctgtatttatttaacaacagctacattgtctgctgggt 65
Query: 61 ttc 63
|||
Sbjct: 66 ttc 68
>RF00651;mir-221;AAYZ01618848.1/488-419 9978:Ochotona princeps
(American pika)
Length = 70
Score = 85.7 bits (43), Expect = 7e-17
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 60
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 6 acctggcatacaatgtagatttctgtattttctgggcaacagctacattgtctgctgggt 65
Query: 61 ttc 63
|||
Sbjct: 66 ttc 68
>RF00651;mir-221;BAAE01085056.1/1241-1173 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 69.9 bits (35), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 60
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 6 acctggcatacaatgtagatttctgtgttt-caattctacagctacattgtctgctgggt 64
Query: 61 ttc 63
|||
Sbjct: 65 ttc 67
>RF00651;mir-221;CU550700.7/20157-20229 7955:Danio rerio
(zebrafish)
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 acagctacattgtctgctgggtttc 63
|||||||||||||||||||||||||
Sbjct: 47 acagctacattgtctgctgggtttc 71
>RF00651;mir-221;BAAE01342535.1/103-172 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 acagctacattgtctgctgggtttc 63
|||||||||||||||||||||||||
Sbjct: 44 acagctacattgtctgctgggtttc 68
