miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00651;mir-221;AADN02010980.1/16388-16456 9031:Gallus gallus
(chicken)
Length = 69
Score = 131 bits (66), Expect = 1e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tcgctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tcgctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactggg 63
Query: 61 tctctg 66
||||||
Sbjct: 64 tctctg 69
>RF00651;mir-221;ABRQ01115829.1/6664-6594 9813:Procavia capensis
(cape rock hyrax)
Length = 71
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtc--tttacaatcagcagctacatctggctactggg 60
||||||||| |||||||||| ||||| ||| |||||| ||||||||||||||||||||
Sbjct: 6 gctcagtagccagtgtagatcctgtcattttgtaatcagtagctacatctggctactggg 65
Query: 61 tctctg 66
||||||
Sbjct: 66 tctctg 71
>RF00651;mir-221;AANH01009585.1/5625-5558 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 68
Score = 67.9 bits (34), Expect = 2e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactgggtc 62
||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 6 gctcagtaggcagtgtagatcctgtgtag-caatcagcagctacatctggctactgggtc 64
Query: 63 tc 64
||
Sbjct: 65 tc 66
>RF00651;mir-221;BAAF04018090.1/2115-2182 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 37 cagcagctacatctggctactgggtctc 64
||||||||||||||||||||||||||||
Sbjct: 39 cagcagctacatctggctactgggtctc 66
>RF00651;mir-221;CU550700.7/19683-19747 7955:Danio rerio
(zebrafish)
Length = 65
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 37 cagcagctacatctggctactgggtctctg 66
||||||||||||| ||||||||||||||||
Sbjct: 36 cagcagctacatccggctactgggtctctg 65
>RF00651;mir-221;AAVX01067207.1/2671-2602 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 cagctacatctggctactgggtctctg 66
||||||||||||| |||||||||||||
Sbjct: 44 cagctacatctggttactgggtctctg 70
