miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00686;mir-338;ABQF01038321.1/45632-45552 59729:Taeniopygia
guttata
Length = 81
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 agcaacactatcctgatgctgtcagagtaagtggtaaagctccagcatcagtgattttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 agcaacactatcctgatgctgtcagagtaagtggtaaagctccagcatcagtgattttgt 70
Query: 61 tgttagtggta 71
|||||||||||
Sbjct: 71 tgttagtggta 81
>RF00686;mir-338;AAVX01041385.1/4416-4496 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 93.7 bits (47), Expect = 3e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 4 aacactatcctgatgctgtcagagtaagtggtaaagctccagcatcagtgattttgttgt 63
|||| ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct: 14 aacaatatcctgatgctgtccgagtatgtggaaaagctccagcatcagtgattttgttgc 73
Query: 64 tagtggt 70
|||||||
Sbjct: 74 tagtggt 80
>RF00686;mir-338;AAVX01571211.1/489-569 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 gctccagcatcagtgattttgttg 62
||||||||||||||||||||||||
Sbjct: 49 gctccagcatcagtgattttgttg 72
>RF00686;mir-338;AAFR03029132.1/115398-115317 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>RF00686;mir-338;AANN01126736.1/1031-1108 9365:Erinaceus europaeus
(western European hedgehog)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 47 ctccagcatcagtgattttgttg 69
>RF00686;mir-338;AL953913.5/23199-23121 10090:Mus musculus (house
mouse)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 48 ctccagcatcagtgattttgttg 70
>RF00686;mir-338;ABRO01103244.1/1456-1377 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 49 ctccagcatcagtgattttgttg 71
>RF00686;mir-338;ABRQ01133047.1/132-55 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 47 ctccagcatcagtgattttgttg 69
>RF00686;mir-338;AAWZ01002449.1/77719-77800 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>RF00686;mir-338;BX323027.8/66170-66089 7955:Danio rerio
(zebrafish)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>RF00686;mir-338;CT033796.7/14466-14548 7955:Danio rerio
(zebrafish)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 52 ctccagcatcagtgattttgttg 74
>RF00686;mir-338;BX547935.12/10590-10671 7955:Danio rerio
(zebrafish)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>RF00686;mir-338;CAAE01014705.1/537256-537337 99883:Tetraodon
nigroviridis
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>RF00686;mir-338;CAAB01002765.1/7900-7981 31033:Takifugu rubripes
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>RF00686;mir-338;AANH01012267.1/23040-22957 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 53 ctccagcatcagtgattttgttg 75
>RF00686;mir-338;AANH01004322.1/123577-123496 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>RF00686;mir-338;BAAF04022903.1/15976-15895 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
>RF00686;mir-338;BAAF04036435.1/2170-2253 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 53 ctccagcatcagtgattttgttg 75
>RF00686;mir-338;BAAF04103498.1/7620-7539 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 51 ctccagcatcagtgattttgttg 73
