miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00700;mir-375;AADN02016765.1/7226-7294 9031:Gallus gallus
(chicken)
Length = 69
Score = 129 bits (65), Expect = 5e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 cctggcgtcgagccccacgtgcaatacctgacctgaacgttttgttcgttcggctcgcgt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 cctggcgtcgagccccacgtgcaagacctgacctgaacgttttgttcgttcggctcgcgt 60
Query: 61 taggcaggt 69
|||||||||
Sbjct: 61 taggcaggt 69
>RF00700;mir-375;AAGU02520619.1/1351-1284 9785:Loxodonta africana
(African savanna elephant)
Length = 68
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 30 gacctgaacgttttgttcgttcggctcgcgttaggcagg 68
||||||| ||||||||||||||||||||||| |||||||
Sbjct: 29 gacctgagcgttttgttcgttcggctcgcgtgaggcagg 67
>RF00700;mir-375;BAAF04058576.1/818-750 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgttaggcaggt 69
|||||||||||||||||||||||| ||||||
Sbjct: 39 gttttgttcgttcggctcgcgttacgcaggt 69
>RF00700;mir-375;ABEP02038283.1/5668-5595 7739:Branchiostoma
floridae (Florida lancelet)
Length = 74
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 36 aacgttttgttcgttcggctcgcgtta 62
|||||||||||||||||||||||||||
Sbjct: 41 aacgttttgttcgttcggctcgcgtta 67
>RF00700;mir-375;ABQO010847357.1/1620-1552 9315:Macropus eugenii
(tammar wallaby)
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 33 ctgaacgttttgttcgttcggctcgcgttaggc 65
|||||||| ||||||||||||||||||| ||||
Sbjct: 33 ctgaacgtattgttcgttcggctcgcgtgaggc 65
>RF00700;mir-375;CU468956.14/114092-114163 7955:Danio rerio
(zebrafish)
Length = 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgttaggcag 67
|||||||||||||||||||||||| ||||
Sbjct: 42 gttttgttcgttcggctcgcgttacgcag 70
>RF00700;mir-375;CU929360.7/11656-11724 7955:Danio rerio
(zebrafish)
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 gttttgttcgttcggctcgcgtta 62
||||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgtta 62
