miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00803;mir-425;ABQF01037869.1/779-863 59729:Taeniopygia guttata
Length = 85
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 4 agatggctttggaatgacacgatcactcccgctgagccagcagccagagagccatcgggg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatggctttggaatgacacgatcactcccgctgagccagcagccagagagccatcgggg 60
Query: 64 atgtcgtgtctttccaaagctcttt 88
|||||||||||||||||||||||||
Sbjct: 61 atgtcgtgtctttccaaagctcttt 85
>RF00803;mir-425;AAWZ01017461.1/6392-6309 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 65.9 bits (33), Expect = 8e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 6 atggctttggaatgacacgatcactcccgctgagccagcag 46
|||| |||||||||||||||||||||||||||||| |||||
Sbjct: 3 atggttttggaatgacacgatcactcccgctgagcgagcag 43
>RF00803;mir-425;ABQO010558253.1/28-112 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 68
|||||||||||||||||||||||||| ||||| |||||| |||||||||| || ||
Sbjct: 6 gctttggaatgacacgatcactcccgttgagcggacagccaagaagccatcgggcatatc 65
Query: 69 gtgtctttccaa 80
|||||| |||||
Sbjct: 66 gtgtctgtccaa 77
>RF00803;mir-425;AANN01668557.1/686-771 9365:Erinaceus europaeus
(western European hedgehog)
Length = 86
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 tggaatgacacgatcactcccgctgagc 40
||||||||||||||||||||||||||||
Sbjct: 10 tggaatgacacgatcactcccgctgagc 37
>RF00803;mir-425;ABRQ01082424.1/2274-2358 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 gctttggaatgacacgatcactcccgctgag 39
|||||||||||||||||||||||||| ||||
Sbjct: 6 gctttggaatgacacgatcactcccgttgag 36
>RF00803;mir-425;ABQF01022817.1/2851-2935 59729:Taeniopygia
guttata
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 10 ctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtcg 69
|||||||||||||| |||||||||||||| | || ||||| |||||| | |||| |
Sbjct: 7 ctttggaatgacaccatcactcccgctgattctacaaccagaaagccatagaggattaca 66
Query: 70 tgtctttccaaagctcttt 88
|||| ||||||||||||||
Sbjct: 67 tgtcattccaaagctcttt 85
>RF00803;mir-425;AAVX01021859.1/1356-1438 7868:Callorhinchus milii
(ghost shark)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 tggaatgacacgatcactcccg 34
||||||||||||||||||||||
Sbjct: 10 tggaatgacacgatcactcccg 31
