miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00746;mir-454;AADN02034763.1/4411-4297 9031:Gallus gallus
(chicken)
Length = 115
Score = 137 bits (69), Expect = 2e-32
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 gaccctatcaatattgcctctgcttttgtgatcagggtagtagtgcaatattgcttatag 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 20 gaccctatcaatattgcctctgcttttgtgctcagggtagtagtgcaatattgcttatag 79
Query: 61 ggtcttttctttt 73
|||||||||||||
Sbjct: 80 ggtcttttctttt 92
>RF00746;mir-454;AAWZ01024587.1/22473-22587 28377:Anolis
carolinensis (green anole)
Length = 115
Score = 75.8 bits (38), Expect = 7e-14
Identities = 67/75 (89%), Gaps = 5/75 (6%)
Strand = Plus / Plus
Query: 1 gaccctatcaatattgcctctgcttttgtgatcagggt---agtagtgcaatattgctta 57
||||||||||||||||||||||||| |||| | || | |||||||||||||||||||
Sbjct: 23 gaccctatcaatattgcctctgcttctgtgct--ggattcaagtagtgcaatattgctta 80
Query: 58 tagggtcttttcttt 72
|||||||||||||||
Sbjct: 81 tagggtcttttcttt 95
>RF00746;mir-454;BX957246.7/151285-151170 7955:Danio rerio
(zebrafish)
Length = 116
Score = 58.0 bits (29), Expect = 2e-08
Identities = 61/70 (87%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 1 gaccctatcaatattgcctctgcttttgtga----tcagggtagtagtgcaatattgctt 56
||||||||||||||||||||||||||| | | | | || ||||||||||||||||||
Sbjct: 23 gaccctatcaatattgcctctgcttttctcactgtttatgg-agtagtgcaatattgctt 81
Query: 57 atagggtctt 66
||||||||||
Sbjct: 82 atagggtctt 91
>RF00746;mir-454;CAAB01003137.1/22509-22626 31033:Takifugu
rubripes
Length = 118
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggtctt 66
||||||||||||||||||||||||||||
Sbjct: 64 agtagtgcaatattgcttatagggtctt 91
>RF00746;mir-454;AANH01010010.1/101669-101555 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 115
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggtctt 66
||||||||||||||||||||||||||||
Sbjct: 64 agtagtgcaatattgcttatagggtctt 91
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gaccctatcaatattgcctctgcttt 26
|||||||||||| |||||||||||||
Sbjct: 23 gaccctatcaatgttgcctctgcttt 48
>RF00746;mir-454;AAFR03045417.1/66257-66371 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 115
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggt 86
>RF00746;mir-454;ABRQ01507750.1/1602-1488 9813:Procavia capensis
(cape rock hyrax)
Length = 115
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggt 86
>RF00746;mir-454;BAAE01186103.1/68-179 8090:Oryzias latipes
(Japanese medaka)
Length = 112
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 63 agtagtgcaatattgcttatagggt 87
>RF00746;mir-454;AAVX01021344.1/1948-2058 7868:Callorhinchus milii
(ghost shark)
Length = 111
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
|||||||||||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggt 86
>RF00746;mir-454;AC091299.2/31120-31004 7955:Danio rerio
(zebrafish)
Length = 117
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
||||||||||||||||| |||||||
Sbjct: 64 agtagtgcaatattgctaatagggt 88
>RF00746;mir-454;AAVX01227898.1/233-348 7868:Callorhinchus milii
(ghost shark)
Length = 116
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 agtagtgcaatattgcttatagggt 63
||||||||||||| |||||||||||
Sbjct: 63 agtagtgcaatatcgcttatagggt 87
