miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00878;mir-456;ABQF01042287.1/70108-70005 59729:Taeniopygia
guttata
Length = 104
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gtgtgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gtgtgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggtt 72
Query: 61 agatggttgtcatgcattc 79
|||||||||||||||||||
Sbjct: 73 agatggttgtcatgcattc 91
>RF00878;mir-456;AADN02011847.1/76016-76127 9031:Gallus gallus
(chicken)
Length = 112
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 3 gtgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttag 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 gtgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttag 82
Query: 63 atggttgtcatgcattc 79
|||||||||||||||||
Sbjct: 83 atggttgtcatgcattc 99
>RF00878;mir-456;AAWZ01005369.1/34970-35074 28377:Anolis
carolinensis (green anole)
Length = 105
Score = 143 bits (72), Expect = 4e-34
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 4 tgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttaga 76
Query: 64 tggttgtcatgcattc 79
|||||||||| |||||
Sbjct: 77 tggttgtcatacattc 92
>RF00878;mir-456;BAAF04097110.1/5066-4963 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 6 tgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttagatg 65
||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||
Sbjct: 18 tgtgagcaggcatcttcccagcctacatgtagatccagccgtctgcaggctggttagatg 77
Query: 66 gttgtca 72
|||||||
Sbjct: 78 gttgtca 84
>RF00878;mir-456;BX004877.10/47607-47503 7955:Danio rerio
(zebrafish)
Length = 105
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 4 tgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttaga 63
|||||| ||||||||||| ||| |||||||||||| | | |||||||||||||||||
Sbjct: 17 tgtgtgtgcaggcatctttccagtctacatgtggatccaggagtctgcaggctggttaga 76
Query: 64 tggttgtca 72
|||||||||
Sbjct: 77 tggttgtca 85
>RF00878;mir-456;AAVX01070382.1/1647-1544 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 63.9 bits (32), Expect = 3e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 1 gtgtgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggtt 60
||||||| ||||||| |||||| ||||||||| || | | | |||||||||||||||||
Sbjct: 13 gtgtgtgagagcaggtatcttcccagcctacacgtaggtcctgaaatctgcaggctggtt 72
Query: 61 agatggttgtcatgca 76
|||||||||| ||||
Sbjct: 73 tgatggttgtcttgca 88
