miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00698;mir-489;AAWZ01021558.1/191255-191164 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 141 bits (71), Expect = 2e-33
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 6 cgtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatc 65
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 cgtgatggcttggtggtcgtatgtatgacgtcatttacttgttcttttaggagtgacatc 61
Query: 66 atatgtacggctgctaaactgctgcatggga 96
|||||||||||||||||||||| |||||||
Sbjct: 62 atatgtacggctgctaaactgccacatggga 92
>RF00698;mir-489;BAAE01010852.1/933-843 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 115 bits (58), Expect = 1e-25
Identities = 83/90 (92%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 7 gtggtggcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatca 66
|||||||| |||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 3 gtggtggcctggtggtcgtatgtatgacgtcatttacttcgatgctt-ggagtgacatca 61
Query: 67 tatgtacggctgctaaactgctgcatggga 96
|||||||||||||||||||||| |||||||
Sbjct: 62 tatgtacggctgctaaactgctacatggga 91
>RF00698;mir-489;ABRQ01031627.1/5609-5518 9813:Procavia capensis
(cape rock hyrax)
Length = 92
Score = 67.9 bits (34), Expect = 2e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
||||||||||||||||| || || ||||| |||| ||| ||| ||||||||||| || ||
Sbjct: 9 gcttggtggtcgtatgtgtggcgccatttgcttgaactcttatgagtgacatcacatata 68
Query: 73 cggctgctaaactgctgcatgg 94
||| ||||||||||| |||||
Sbjct: 69 cggtggctaaactgctccatgg 90
>RF00698;mir-489;ABRN01117807.1/20359-20268 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 92
Score = 63.9 bits (32), Expect = 4e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
||||||||||||||||| || || ||| |||| | || |||||||||||||||| || ||
Sbjct: 9 gcttggtggtcgtatgtgtggcgccatctactggaacctttaggagtgacatcacatata 68
Query: 73 cggctgctaaactgct 88
||| |||||||||||
Sbjct: 69 cggtggctaaactgct 84
>RF00698;mir-489;AAGW01691909.1/791-700 9986:Oryctolagus cuniculus
(rabbit)
Length = 92
Score = 56.0 bits (28), Expect = 9e-08
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
||||||||||||||||| || | |||| ||||| || |||||| ||||||||| || ||
Sbjct: 9 gcttggtggtcgtatgtgtggtgccattcacttgaacctttaggggtgacatcacatata 68
Query: 73 cggctgctaaactgct 88
||| |||||||||||
Sbjct: 69 cggtggctaaactgct 84
>RF00698;mir-489;AAQQ01558075.1/3986-3895 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 29 tatgacgtcatttacttggacttttaggagtgacatcatatgtacggctgctaaactgc 87
|||| ||||||||||||| |||||| | |||||||||| || | | || ||||||||||
Sbjct: 25 tatggcgtcatttacttgaacttttggaagtgacatcaaatatccagcagctaaactgc 83
