miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00892;mir-551;ABQF01023095.1/42853-42939 59729:Taeniopygia
guttata
Length = 87
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 gaaatcaagggtgggtaagacctggtgagcaaactctaaggcgacccatacttggtttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gaaatcaagggtgggtaagacctggtgagcaaactctaaggcgacccatacttggtttca 74
Query: 61 ggggctgtggg 71
|||||||||||
Sbjct: 75 ggggctgtggg 85
>RF00892;mir-551;AAFR03046841.1/43899-43813 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 gaaatcaagggtgggtaagacctggtgagcaaactctaaggcgacccatacttggtttca 60
|||||||||| ||||| |||||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 15 gaaatcaaggatgggtgagacctcgtgtgcaaactgaaaggcgacccatacttggtttca 74
Query: 61 ggggct 66
||||||
Sbjct: 75 ggggct 80
>RF00892;mir-551;AADN02021036.1/52994-52908 9031:Gallus gallus
(chicken)
Length = 87
Score = 73.8 bits (37), Expect = 2e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1 gaaatcaagggtgggtaagacctggtgagcaaactctaaggcgacccatacttggtttca 60
||||||||||||||||||||||| || | |||| ||||||||||||||||||||||
Sbjct: 15 gaaatcaagggtgggtaagaccttgtaggataactggcaggcgacccatacttggtttca 74
Query: 61 ggggctgtg 69
|||||||||
Sbjct: 75 ggggctgtg 83
>RF00892;mir-551;AAWZ01032406.1/96128-96215 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 gaaatcaagggtgggtaagacctggtgagcaaactctaaggcgacccatacttggtttca 60
|||||||||| ||||| |||||| |||| || ||| |||||||||||||||||||||||
Sbjct: 16 gaaatcaaggttgggtgagacctcgtgaacagactggaaggcgacccatacttggtttca 75
Query: 61 gg 62
||
Sbjct: 76 gg 77
>RF00892;mir-551;AAQR01614836.1/887-972 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggctgtg 69
||||||||||| ||||||||||||||||||||
Sbjct: 51 aaggcgacccacacttggtttcaggggctgtg 82
>RF00892;mir-551;ABRQ01321591.1/2376-2461 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 54.0 bits (27), Expect = 2e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gaaatcaagggtgggtaagacctggtgagcaaactctaaggcgacccatacttggtttca 60
||||||||| |||||| |||||||||| |||| |||||||||||||||||||||||
Sbjct: 15 gaaatcaagcgtgggtgagacctggtgca-aaacaggaaggcgacccatacttggtttca 73
Query: 61 ggggctg 67
| |||||
Sbjct: 74 gaggctg 80
>RF00892;mir-551;AAKN02050963.1/24909-24994 10141:Cavia porcellus
(domestic guinea pig)
Length = 86
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggctg 67
|||||||||||||||||||||||| |||||
Sbjct: 51 aaggcgacccatacttggtttcagaggctg 80
>RF00892;mir-551;AANN01687869.1/1924-1838 9365:Erinaceus europaeus
(western European hedgehog)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttcaggggct 66
|||||||||||||||||||||||| ||||
Sbjct: 52 aaggcgacccatacttggtttcagaggct 80
>RF00892;mir-551;AAVX01059360.1/184-266 7868:Callorhinchus milii
(ghost shark)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 aaggcgacccatacttggtttc 59
||||||||||||||||||||||
Sbjct: 51 aaggcgacccatacttggtttc 72
