miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;ABRQ01065900.1/2710-2791 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 111 bits (56), Expect = 9e-25
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 1 gggcttagctgcttgtgagcagagtccacaccaagtcgtgttcacagtggctaagttccg 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 15 gggcttagctgcttgtgagcagggtccacaccaagtcgtgttcacagtggctaagttccg 74
>RF00644;mir-27;AAPY01721327.1/686-605 37347:Tupaia belangeri
(northern tree shrew)
Length = 82
Score = 75.8 bits (38), Expect = 5e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 gggcttagctgcttgtgagcagagtccacaccaagtcgtgttcacagtggctaagttc 58
|||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||
Sbjct: 15 gggcttagctgcttgtgagcagcgtccacaccaagctgtgctcacagtggctacgttc 72
>RF00644;mir-27;BAAE01159437.1/1557-1475 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 36 tcgtgttcacagtggctaagttccg 60
|||||||||||||||||||||||||
Sbjct: 51 tcgtgttcacagtggctaagttccg 75
>RF00644;mir-27;AAPN01322484.1/470-549 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 37 cgtgttcacagtggctaagttccg 60
||||||||||||||||||||||||
Sbjct: 49 cgtgttcacagtggctaagttccg 72
>RF00644;mir-27;AANN01357153.1/1239-1159 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 caccaagtcgtgttcacagtggctaagttccg 60
|||| |||| ||||||||||||||||||||||
Sbjct: 42 caccgagtcttgttcacagtggctaagttccg 73
>RF00644;mir-27;AAFR03052006.1/45216-45298 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gtgttcacagtggctaagttccg 60
|||||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttccg 75
>RF00644;mir-27;CAAB01002712.1/1229-1146 31033:Takifugu rubripes
Length = 84
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gtgttcacagtggctaagttccg 60
|||||||||||||||||||||||
Sbjct: 54 gtgttcacagtggctaagttccg 76
>RF00644;mir-27;ABPM01053951.1/750-668 106582:Maylandia zebra
(zebra mbuna)
Length = 83
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gtgttcacagtggctaagttccg 60
|||||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttccg 75
>RF00644;mir-27;AANH01005378.1/81241-81159 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gtgttcacagtggctaagttccg 60
|||||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttccg 75
>RF00644;mir-27;ABRO01400204.1/542-621 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tgttcacagtggctaagttccg 60
||||||||||||||||||||||
Sbjct: 51 tgttcacagtggctaagttccg 72
>RF00644;mir-27;AAWZ01000886.1/15608-15527 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tgttcacagtggctaagttccg 60
||||||||||||||||||||||
Sbjct: 53 tgttcacagtggctaagttccg 74
>RF00644;mir-27;BX664751.9/57144-57062 7955:Danio rerio
(zebrafish)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tgttcacagtggctaagttccg 60
||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccg 75
>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tgttcacagtggctaagttccg 60
||||||||||||||||||||||
Sbjct: 57 tgttcacagtggctaagttccg 78
