miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;BAAF04040483.1/6623-6705 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 101 bits (51), Expect = 9e-22
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 1 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 14 agagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagttc 73
Query: 61 tgc 63
|||
Sbjct: 74 tgc 76
>RF00644;mir-27;AAFR03027068.1/11019-11101 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 93.7 bits (47), Expect = 2e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 1 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60
|||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 14 agagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggctaagttc 73
Query: 61 tgc 63
|||
Sbjct: 74 tgc 76
>RF00644;mir-27;AAPN01152921.1/1247-1165 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 77.8 bits (39), Expect = 1e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 1 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60
||||||||||||||||||||||||||| || | | |||||||||||||||||||||||
Sbjct: 14 agagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagttc 73
Query: 61 tgc 63
|||
Sbjct: 74 tgc 76
>RF00644;mir-27;AAVX01114775.1/589-508 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 77.8 bits (39), Expect = 1e-14
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 14 agagcttagctgattggtgaacagtga-ttgttgttgctttgttcacagtggctaagttc 72
Query: 61 tgc 63
|||
Sbjct: 73 tgc 75
>RF00644;mir-27;CR847548.8/136623-136702 7955:Danio rerio
(zebrafish)
Length = 80
Score = 65.9 bits (33), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 1 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60
||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 14 agagcttagctgattggtgaacagtgattg---aactctttgttcacagtggctaagttc 70
Query: 61 tgc 63
|||
Sbjct: 71 tgc 73
>RF00644;mir-27;CT027840.6/2845-2927 7955:Danio rerio (zebrafish)
Length = 83
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tttgttcacagtggctaagttct 61
|||||||||||||||||||||||
Sbjct: 52 tttgttcacagtggctaagttct 74
>RF00644;mir-27;AANN01357153.1/1239-1159 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ttgttcacagtggctaagttc 60
|||||||||||||||||||||
Sbjct: 51 ttgttcacagtggctaagttc 71
>RF00644;mir-27;CAAB01004552.1/601-519 31033:Takifugu rubripes
Length = 83
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ttgttcacagtggctaagttc 60
|||||||||||||||||||||
Sbjct: 53 ttgttcacagtggctaagttc 73
>RF00644;mir-27;AANH01005391.1/487407-487325 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ttgttcacagtggctaagttc 60
|||||||||||||||||||||
Sbjct: 53 ttgttcacagtggctaagttc 73
>RF00644;mir-27;BAAF04082680.1/4929-4846 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ttgttcacagtggctaagttc 60
|||||||||||||||||||||
Sbjct: 54 ttgttcacagtggctaagttc 74
>RF00644;mir-27;BAAF04073622.1/5313-5395 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ttgttcacagtggctaagttc 60
|||||||||||||||||||||
Sbjct: 53 ttgttcacagtggctaagttc 73
