miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00917;mir-708;ABRQ01069155.1/911-831 9813:Procavia capensis
          (cape rock hyrax)
          Length = 81

 Score =  115 bits (58), Expect = 6e-26
 Identities = 61/62 (98%)
 Strand = Plus / Minus

                                                                      
Query: 1  aaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcctg 60
          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 70 aaggagctcacagtctattgagttgcctttctgacttccccactagattgtgagctcctg 11

            
Query: 61 ga 62
          ||
Sbjct: 10 ga 9

>RF00655;mir-28;ABRQ01069155.1/829-914 9813:Procavia capensis
          (cape rock hyrax)
          Length = 86

 Score =  115 bits (58), Expect = 6e-26
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcctg 60
          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 14 aaggagctcacagtctattgagttgcctttctgacttccccactagattgtgagctcctg 73

            
Query: 61 ga 62
          ||
Sbjct: 74 ga 75

>RF00917;mir-708;ABRR01063579.1/2239-2159 30538:Lama pacos
          (alpaca)
          Length = 81

 Score =  107 bits (54), Expect = 1e-23
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                      
Query: 1  aaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcctg 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 70 aaggagctcacagtctattgagttgcctttctgcctttcccactagattttgagctcctg 11

            
Query: 61 ga 62
          ||
Sbjct: 10 ga 9

>RF00917;mir-708;AAHX01070100.1/15768-15688 10116:Rattus
          norvegicus (Norway rat)
          Length = 81

 Score = 91.7 bits (46), Expect = 9e-19
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                      
Query: 1  aaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcctg 60
          |||||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||
Sbjct: 70 aaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcctg 11

            
Query: 61 ga 62
          ||
Sbjct: 10 ga 9

>RF00917;mir-708;AAKN02012362.1/20992-20912 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 81

 Score = 83.8 bits (42), Expect = 2e-16
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                      
Query: 1  aaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcctg 60
          |||||||||||||||||||||||| | |||  |||||||||||||||||| |||||||||
Sbjct: 70 aaggagctcacagtctattgagttacttttaagactttcccactagattgggagctcctg 11

            
Query: 61 ga 62
          ||
Sbjct: 10 ga 9