miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;AADN02039691.1/12626-12563 9031:Gallus gallus
(chicken)
Length = 64
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 actgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggtta 60
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 4 actgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcggtta 63
>RF00074;mir-29;AAVX01097121.1/1868-1805 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 56.0 bits (28), Expect = 5e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 actgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggtta 60
|||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct: 4 actgatttcttttggtgttcagagtcttggtcgatttctagcaccatttgaaatcggtta 63
>RF00074;mir-29;AAVX01087182.1/157-94 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 56.0 bits (28), Expect = 5e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 actgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggtta 60
|||||||||| ||||||||||||| | | | | || ||||||||||| ||||||||||||
Sbjct: 4 actgatttctcttggtgttcagaggctacacacttatctagcaccatttgaaatcggtta 63
>RF00074;mir-29;BAAF04011253.1/3876-3938 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 50.1 bits (25), Expect = 3e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 4 gatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggtta 60
||||||||||||||||||||||| | | ||||||||||||| ||||||||||||
Sbjct: 7 gatttcttttggtgttcagagtccgt-tctgtttctagcaccatttgaaatcggtta 62
>RF00074;mir-29;AAWZ01025678.1/1955-1892 28377:Anolis carolinensis
(green anole)
Length = 64
Score = 48.1 bits (24), Expect = 1e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 1 actgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggtta 60
||||||||||| |||||||| ||||| | | ||||||||||||| ||||||||||||
Sbjct: 4 actgatttcttctggtgttcggagtctagttctctttctagcaccatttgaaatcggtta 63
>RF00074;mir-29;AAVX01247987.1/1-62 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 attttctagcaccatctgaaatcggtt 59
||||||||||||||| |||||||||||
Sbjct: 36 attttctagcaccatttgaaatcggtt 62
>RF00074;mir-29;CAAE01015043.1/838981-839043 99883:Tetraodon
nigroviridis
Length = 63
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 35 tttctagcaccatctgaaatcggtta 60
||||||||||||| ||||||||||||
Sbjct: 37 tttctagcaccatttgaaatcggtta 62
>RF00074;mir-29;CAAB01004459.1/12691-12629 31033:Takifugu rubripes
Length = 63
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 35 tttctagcaccatctgaaatcggtta 60
||||||||||||| ||||||||||||
Sbjct: 37 tttctagcaccatttgaaatcggtta 62
>RF00074;mir-29;CR749762.6/80332-80264 7955:Danio rerio
(zebrafish)
Length = 69
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 34 ttttctagcaccatctgaaatcggt 58
|||||||||||||| ||||||||||
Sbjct: 40 ttttctagcaccatttgaaatcggt 64
>RF00074;mir-29;CAAB01003353.1/24980-24916 31033:Takifugu rubripes
Length = 65
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 ttctagcaccatctgaaatcggtta 60
|||||||||||| ||||||||||||
Sbjct: 40 ttctagcaccatttgaaatcggtta 64
>RF00074;mir-29;BAAE01022609.1/1233-1169 8090:Oryzias latipes
(Japanese medaka)
Length = 65
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 ttctagcaccatctgaaatcggtta 60
|||||||||||| ||||||||||||
Sbjct: 40 ttctagcaccatttgaaatcggtta 64
