miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattcccaa 46
||||||||||||||||||||||||||
Sbjct: 89 tgatgcagcatcatcaagattcccaa 64
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattccca 45
|||||||||||||||||||||||||
Sbjct: 117 tgatgcagcatcatcaagattccca 93
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattccca 45
|||||||||||||||||||||||||
Sbjct: 127 tgatgcagcatcatcaagattccca 103
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 128 ttgtgaatcttgatgatgttgcatcctcaaacac 161
||||||||||| |||||| ||||||| |||||||
Sbjct: 34 ttgtgaatcttcatgatgctgcatccgcaaacac 1
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 22 gatgcagcatcatcaagattccca 45
||||||||||||||||||||||||
Sbjct: 122 gatgcagcatcatcaagattccca 99
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 22 gatgcagcatcatcaagattccca 45
||||||||||||||||||||||||
Sbjct: 125 gatgcagcatcatcaagattccca 102
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 22 gatgcagcatcatcaagattccca 45
||||||||||||||||||||||||
Sbjct: 174 gatgcagcatcatcaagattccca 151
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 gttagatgatgcagcatcatcaagattc 42
||||| ||||||||||||||||||||||
Sbjct: 3 gttagctgatgcagcatcatcaagattc 30
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 22 gatgcagcatcatcaagattccca 45
||||||||||||||||||||||||
Sbjct: 229 gatgcagcatcatcaagattccca 206
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 126 ttttgtgaatcttgatgatgttgcatcctcaaaca 160
|||||||||||||||||||| | ||||| ||||||
Sbjct: 36 ttttgtgaatcttgatgatgctccatccgcaaaca 2
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 24 tgcagcatcatcaagattccca 45
||||||||||||||||||||||
Sbjct: 190 tgcagcatcatcaagattccca 169
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 24 tgcagcatcatcaagattcccaa 46
|||||||||||||||||||||||
Sbjct: 133 tgcagcatcatcaagattcccaa 111
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 24 tgcagcatcatcaagattcccaa 46
|||||||||||||||||||||||
Sbjct: 127 tgcagcatcatcaagattcccaa 105
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 23 atgcagcatcatcaagattccca 45
|||||||||||||||||||||||
Sbjct: 145 atgcagcatcatcaagattccca 123
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 23 atgcagcatcatcaagattccca 45
|||||||||||||||||||||||
Sbjct: 143 atgcagcatcatcaagattccca 121
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 23 atgcagcatcatcaagattccca 45
|||||||||||||||||||||||
Sbjct: 180 atgcagcatcatcaagattccca 158
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 107 tgatgcagcatcatcaagattc 86
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 101 tgatgcagcatcatcaagattc 80
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 122 tgatgcagcatcatcaagattc 101
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 121 tgatgcagcatcatcaagattc 100
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 24 tgcagcatcatcaagattccca 45
||||||||||||||||||||||
Sbjct: 145 tgcagcatcatcaagattccca 124
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 135 tgatgcagcatcatcaagattc 114
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 151 tgatgcagcatcatcaagattc 130
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 152 tgatgcagcatcatcaagattc 131
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 82 tgatgcagcatcatcaagattc 61
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 160 tgatgcagcatcatcaagattc 139
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 24 tgcagcatcatcaagattccca 45
||||||||||||||||||||||
Sbjct: 129 tgcagcatcatcaagattccca 108
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 140 tgatgcagcatcatcaagattc 119
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 131 tgatgcagcatcatcaagattc 110
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 114 tgatgcagcatcatcaagattc 93
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tgatgcagcatcatcaagattc 42
||||||||||||||||||||||
Sbjct: 104 tgatgcagcatcatcaagattc 83
