miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;ABRR01582801.1/1311-1240 30538:Lama pacos (alpaca)
Length = 72
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 agctggtttcacatggtggcttagatttttccatctttgtatctagcaccatttgaaatc 60
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5 agctggtttcacatggcggcttagattttttcatctttgtatctagcaccatttgaaatc 64
Query: 61 agtgtt 66
| ||||
Sbjct: 65 aatgtt 70
>RF00074;mir-29;AADN02044957.1/1768-1698 9031:Gallus gallus
(chicken)
Length = 71
Score = 107 bits (54), Expect = 2e-23
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 agctggtttcacatggtggcttagatttttccatctttgtatctagcaccatttgaaatc 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 5 agctggtttcacatggtggcttagattttccca-ctttgtatctagcaccatttgaaatc 63
Query: 61 agtgtt 66
||||||
Sbjct: 64 agtgtt 69
>RF00074;mir-29;AANN01104186.1/394-465 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 83.8 bits (42), Expect = 2e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 agctggtttcacatggtggcttagatttttccatctttgtatctagcaccatttgaaatc 60
|||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct: 5 agctggtttcacatggtgccttagatttccccatcgcagtatctagcaccatttgaaatc 64
Query: 61 agtgtt 66
||||||
Sbjct: 65 agtgtt 70
>RF00074;mir-29;BAAE01168881.1/2069-2001 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 tatctagcaccatttgaaatcagtgtt 66
|||||||||||||||||||||||||||
Sbjct: 41 tatctagcaccatttgaaatcagtgtt 67
>RF00074;mir-29;CAAK05057292.1/12337-12269 7955:Danio rerio
(zebrafish)
Length = 69
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 atctagcaccatttgaaatcagtgtt 66
||||||||||||||||||||||||||
Sbjct: 42 atctagcaccatttgaaatcagtgtt 67
>RF00074;mir-29;BX001041.6/159008-158937 7955:Danio rerio
(zebrafish)
Length = 72
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 atctagcaccatttgaaatcagtgtt 66
||||||||||||||||||||||||||
Sbjct: 45 atctagcaccatttgaaatcagtgtt 70
>RF00074;mir-29;AAVX01078214.1/596-525 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 52.0 bits (26), Expect = 8e-07
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1 agctggtttcacatggtggcttagatttttccatctttgtatctagcaccatttgaaatc 60
||||||||||| |||||| |||||||| | ||| || |||||||||||||||||||
Sbjct: 5 agctggtttcatatggtgtcttagattgtaccagtgctgactctagcaccatttgaaatc 64
Query: 61 agtgtt 66
||||||
Sbjct: 65 agtgtt 70
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tctagcaccatttgaaatcagtgtt 66
|||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgtt 69
>RF00074;mir-29;BX465862.7/161280-161350 7955:Danio rerio
(zebrafish)
Length = 71
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tctagcaccatttgaaatcagtgtt 66
|||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgtt 69
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 gctggtttcacatggtggcttagat 26
|||||||||||||||||| ||||||
Sbjct: 6 gctggtttcacatggtggtttagat 30
>RF00074;mir-29;CAAE01013715.1/7308-7378 99883:Tetraodon
nigroviridis
Length = 71
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tctagcaccatttgaaatcagtgtt 66
|||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgtt 69
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tctagcaccatttgaaatcagtgtt 66
|||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgtt 69
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tctagcaccatttgaaatcagtgtt 66
|||||||||||||||||||||||||
Sbjct: 44 tctagcaccatttgaaatcagtgtt 68
>RF00074;mir-29;CAAB01000294.1/99403-99473 31033:Takifugu rubripes
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 37 ttgtatctagcaccatttgaaatcagtgtt 66
|||| ||||||||||| |||||||||||||
Sbjct: 40 ttgtctctagcaccatgtgaaatcagtgtt 69
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 atctagcaccatttgaaatcagtgtt 66
|||||||||||||||||||| |||||
Sbjct: 42 atctagcaccatttgaaatcggtgtt 67
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 atctagcaccatttgaaatcagtgtt 66
|||||||||||||||||||| |||||
Sbjct: 42 atctagcaccatttgaaatcggtgtt 67
>RF00074;mir-29;AANH01001435.1/148652-148722 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 42 tctagcaccatttgaaatcagtgtt 66
||||||||||| |||||||||||||
Sbjct: 45 tctagcaccatatgaaatcagtgtt 69
>RF00074;mir-29;AAVX01087182.1/157-94 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 tatctagcaccatttgaaatc 60
|||||||||||||||||||||
Sbjct: 38 tatctagcaccatttgaaatc 58