miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;AAYZ01122954.1/1089-1030 9978:Ochotona princeps
(American pika)
Length = 60
Score = 71.9 bits (36), Expect = 8e-13
Identities = 54/59 (91%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctggaaga--cagcaaagctttcagtcagatgtttgc 57
||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaagaagcggctaagctttcagtcagatgtttgc 59
>RF00131;mir-30;ABRQ01189397.1/6501-6442 9813:Procavia capensis
(cape rock hyrax)
Length = 60
Score = 65.9 bits (33), Expect = 5e-11
Identities = 54/60 (90%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctggaagac--agcaaagctttcagtcagatgtttgct 58
||||||||||||||||||||||||| | ||| ||| |||||||||||| ||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtacgacagagctaagctttcagtccgatgtttgct 60
>RF00131;mir-30;AAPN01319291.1/18051-18110 9258:Ornithorhynchus
anatinus (platypus)
Length = 60
Score = 58.0 bits (29), Expect = 1e-08
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctggaagacagc--aaagctttcagtcagatgtttgct 58
||||||||||||||||||||||||| || | | | |||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaaaataccttcaagctttcagtcagatgtttgct 60
>RF00131;mir-30;AAVX01365666.1/262-201 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 56.0 bits (28), Expect = 5e-08
Identities = 53/61 (86%), Gaps = 4/61 (6%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctggaagacagca----aagctttcagtcagatgtttg 56
||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaaaacagcagctccagctttcagtccgatgtttg 60
Query: 57 c 57
|
Sbjct: 61 c 61
>RF00131;mir-30;CAAB01000020.1/215834-215777 31033:Takifugu
rubripes
Length = 58
Score = 54.0 bits (27), Expect = 2e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctggaagacagcaaagctttcagtcagatgttt 55
||||||||||||||||||||||||| | ||| | ||||||||||| |||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtcactcagaagagctttcagtctgatgttt 55
>RF00131;mir-30;AANH01002465.1/73021-72964 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 58
Score = 52.0 bits (26), Expect = 7e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctggaagacagcaaagctttcagtcagatgtttgct 58
||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtccatctgcagagctttcagtccgatgtttgct 58
>RF00131;mir-30;ABQF01032194.1/21176-21232 59729:Taeniopygia
guttata
Length = 57
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctg 25
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctg 25
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 37 agctttcagtcagatgtttgct 58
||||||||||||||||||||||
Sbjct: 36 agctttcagtcagatgtttgct 57
>RF00131;mir-30;AADN02022374.1/21255-21311 9031:Gallus gallus
(chicken)
Length = 57
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctg 25
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctg 25
>RF00131;mir-30;BX323874.4/7995-7933 7955:Danio rerio (zebrafish)
Length = 63
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctg 25
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctg 25
>RF00131;mir-30;BAAF04077266.1/8695-8638 8090:Oryzias latipes
(Japanese medaka)
Length = 58
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctg 25
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctg 25
>RF00131;mir-30;ABRT010169987.1/2049-1991 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctg 25
||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctg 25
>RF00131;mir-30;ABRQ01009475.1/3495-3435 9813:Procavia capensis
(cape rock hyrax)
Length = 61
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctg 25
||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctg 25
>RF00131;mir-30;ABQF01061949.1/5737-5797 59729:Taeniopygia guttata
Length = 61
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctggaag 29
||||||||||| ||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctggaag 29
>RF00131;mir-30;AADN02002528.1/88445-88506 9031:Gallus gallus
(chicken)
Length = 62
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctg 25
||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctg 25
>RF00131;mir-30;AAVX01474940.1/155-214 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgtaaacatccccgactggaagctg 25
||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctg 25
