miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;AAKN02055704.1/76333-76394 10141:Cavia porcellus
(domestic guinea pig)
Length = 62
Score = 99.6 bits (50), Expect = 4e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctgtaaggtgctcagaggggctttcagtcggatgttta 60
|||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtaaagtgttcagaggagctttcagtcggatgttta 60
Query: 61 ca 62
||
Sbjct: 61 ca 62
>RF00131;mir-30;AADN02043797.1/10718-10657 9031:Gallus gallus
(chicken)
Length = 62
Score = 77.8 bits (39), Expect = 1e-14
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctgtaaggtgctcag-aggggctttcagtcggatgttt 59
|||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtgaggtg-tcagcgggggctttcagtcggatgttt 59
Query: 60 aca 62
|||
Sbjct: 60 aca 62
>RF00131;mir-30;AAWZ01013131.1/23739-23678 28377:Anolis
carolinensis (green anole)
Length = 62
Score = 75.8 bits (38), Expect = 5e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctgtaaggtgctcagaggggctttcagtcggatgttta 60
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtgcaaggctcaaaggggctttcagtcggatgttta 60
Query: 61 ca 62
||
Sbjct: 61 ca 62
>RF00131;mir-30;ABQF01061949.1/5737-5797 59729:Taeniopygia guttata
Length = 61
Score = 67.9 bits (34), Expect = 1e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctgtaaggtgctcagaggggctttcagtcggatgttta 60
||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctggaagg-gctggaaggagctttcagtcggatgttta 59
Query: 61 ca 62
||
Sbjct: 60 ca 61
>RF00131;mir-30;ABRQ01009475.1/3495-3435 9813:Procavia capensis
(cape rock hyrax)
Length = 61
Score = 54.0 bits (27), Expect = 2e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctgtaaggtgctcagaggggctttcagtcggatgttt 59
|||||||||||| ||||||||||||| | | | |||| ||||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtgaag-ccacagatgggctttcagtcggatgttt 58
>RF00131;mir-30;AAVX01474940.1/155-214 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 54.0 bits (27), Expect = 2e-07
Identities = 53/59 (89%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctgtaaggtgctcagaggggctttcagtcggatgttt 59
|||||||||||| ||||||||||||| ||| || || | ||||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtgaggggc-ca-atgggctttcagtcggatgttt 57
>RF00131;mir-30;AANH01002293.1/5342-5405 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctgt 26
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgt 26
>RF00131;mir-30;CR356236.12/41533-41474 7955:Danio rerio
(zebrafish)
Length = 60
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctg 25
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;CAAB01000598.1/36787-36849 31033:Takifugu rubripes
Length = 63
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctg 25
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 ggctttcagtcggatgtttaca 62
||||||||||||||||||||||
Sbjct: 42 ggctttcagtcggatgtttaca 63
>RF00131;mir-30;BAAF04002319.1/6281-6343 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctg 25
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;BAAF04079177.1/18181-18241 8090:Oryzias latipes
(Japanese medaka)
Length = 61
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctg 25
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 ggggctttcagtcggatgttt 59
|||||||||||||||||||||
Sbjct: 38 ggggctttcagtcggatgttt 58
>RF00131;mir-30;ABRT010169987.1/2049-1991 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctgt 26
|||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
>RF00131;mir-30;AADN02002528.1/88445-88506 9031:Gallus gallus
(chicken)
Length = 62
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctgt 26
|||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
>RF00131;mir-30;AAYZ01122954.1/1089-1030 9978:Ochotona princeps
(American pika)
Length = 60
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgtaaacatccttgactggaagctgtaag 29
||||||||||| ||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaag 29
