miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAYZ01156209.1/2544-2612 9978:Ochotona princeps
(American pika)
Length = 69
Score = 111 bits (56), Expect = 9e-25
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggcggtaaccgtgcaatgtttccacagtgcatc 65
>RF00667;mir-33;AC105358.8/20002-19934 10090:Mus musculus (house
mouse)
Length = 69
Score = 97.6 bits (49), Expect = 1e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggcaatacctgtgcaatgtttccacagtgcatc 65
Query: 61 a 61
|
Sbjct: 66 a 66
>RF00667;mir-33;AAIY01417522.1/685-752 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 68
Score = 79.8 bits (40), Expect = 3e-15
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgttctggcagt-gccgtgcaatgtttccacagtgcatc 64
>RF00667;mir-33;ABRP01241176.1/6014-5945 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 75.8 bits (38), Expect = 5e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatg-ttctggcggtacccgtgcaatgtttccacagtgcat 59
||||||||||||||||||||||| || ||| ||||||| |||| ||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtttatggtggtacccatgcagtgtttccacagtgcat 65
Query: 60 ca 61
||
Sbjct: 66 ca 67
>RF00667;mir-33;AAPY01023874.1/2160-2093 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 73.8 bits (37), Expect = 2e-13
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
|||||||||||||||||||||||| ||| | ||| || ||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtcctgacagta-ccatgcaatgtttccacagtgcatc 64
Query: 61 a 61
|
Sbjct: 65 a 65
>RF00667;mir-33;AAPN01437665.1/3526-3458 9258:Ornithorhynchus
anatinus (platypus)
Length = 69
Score = 69.9 bits (35), Expect = 3e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcat 59
||||||||||||||||||||| |||| ||| |||| |||||||||| |||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagtgcat 64
>RF00667;mir-33;AAWZ01021152.1/40382-40314 28377:Anolis
carolinensis (green anole)
Length = 69
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgca 58
||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctagcagtatttgtgcaatgtttccgcagtgca 63
>RF00667;mir-33;AADN02006059.1/2390-2322 9031:Gallus gallus
(chicken)
Length = 69
Score = 61.9 bits (31), Expect = 8e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtt 47
|||||||||||||||||||||||| ||||| ||| | ||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgtt 52
>RF00667;mir-33;AANH01011106.1/1499-1563 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 65
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgtt 25
|||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtt 30
>RF00667;mir-33;AAJJ01000068.1/107964-107901 7070:Tribolium
castaneum (red flour beetle)
Length = 64
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgtt 25
|||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtt 30
>RF00667;mir-33;AAPN01422427.1/10575-10641 9258:Ornithorhynchus
anatinus (platypus)
Length = 67
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;AAWZ01041754.1/18913-18979 28377:Anolis
carolinensis (green anole)
Length = 67
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;AANH01004390.1/133329-133397 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;BAAE01264275.1/1544-1477 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;ABEP02003886.1/24922-24856 7739:Branchiostoma
floridae (Florida lancelet)
Length = 67
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;ABEP02003886.1/24513-24447 7739:Branchiostoma
floridae (Florida lancelet)
Length = 67
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;AANH01004216.1/19959-19891 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatg 23
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;BAAE01000948.1/5094-5161 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatg 23
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AAZX01017121.1/8029-8095 7425:Nasonia vitripennis
(jewel wasp)
Length = 67
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatg 23
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AADG05009493.1/1176-1111 7460:Apis mellifera
(honey bee)
Length = 66
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatg 23
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AABS01001128.1/11040-10976 7719:Ciona intestinalis
Length = 65
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AACT01006707.1/8663-8725 51511:Ciona savignyi
Length = 63
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;ABQO010273055.1/1298-1232 9315:Macropus eugenii
(tammar wallaby)
Length = 67
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;CAAE01014738.1/1624047-1623979 99883:Tetraodon
nigroviridis
Length = 69
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;CAAB01001000.1/62134-62064 31033:Takifugu rubripes
Length = 71
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AADK01019309.1/4596-4529 7091:Bombyx mori
(domestic silkworm)
Length = 68
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AAWU01038467.1/41288-41214 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 75
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AAGE02018815.1/108790-108863 7159:Aedes aegypti
(yellow fever mosquito)
Length = 74
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;ABKP02018093.1/235-307 377271:Anopheles gambiae M
Length = 73
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
