miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABRQ01219522.1/1254-1171 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 143 bits (72), Expect = 4e-34
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtcctctgctgcttacaatcactaac 60
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctggagcttacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 119 bits (60), Expect = 6e-27
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtcctctgctgcttacaatcactaac 60
||||||||||||||||||||||| |||||||||||| ||| |||| | |||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtagttagctgattgtattctactgcctgcaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABRO01055556.1/3019-2935 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 115 bits (58), Expect = 9e-26
Identities = 82/86 (95%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgt-cctctgctgc-ttacaatcacta 58
|||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtacctc-ggtgctttacaatcacta 59
Query: 59 actccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||||
Sbjct: 60 actccactgccatcaaaacaaggcac 85
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtcctctgctgcttacaatcactaac 60
||||||||||||||||||||||| ||||||||||| | | | || |||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtagttagctgattggaccatcccgcccgcaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtcctctgctgcttacaatcactaac 60
||||| |||||| |||||||||| |||||||||||| | | || | |||||||||||
Sbjct: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
Query: 61 tccactgccatcaaaacaaggcac 84
| ||||||||||||||||||||||
Sbjct: 61 ttcactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaactccactgccatcaaaacaaggcac 84
||||||||||||| |||||||| |||||||||||||
Sbjct: 49 acaatcactaacttcactgccaccaaaacaaggcac 84
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 ggtttgtaggcagtgtaattagctgattgt 36
||||||||||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtagttagctgattgt 36
