miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABVD01341709.1/1775-1696 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 80
Score = 101 bits (51), Expect = 8e-22
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattgctattagtaccaatcactaaccacacggccagg 68
>RF00456;mir-34;ABRQ01219522.1/667-588 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 101 bits (51), Expect = 8e-22
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 14 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacagccagg 68
>RF00456;mir-34;ABRO01055556.1/2540-2461 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 85.7 bits (43), Expect = 5e-17
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
|||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattgctgaccgtaccaatcactaaccacacggccagg 68
>RF00456;mir-34;AAPN01276489.1/4603-4524 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 69.9 bits (35), Expect = 3e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
||||||||||||||||||||||||| || ||||||||||| |||||| ||||||
Sbjct: 14 aggcagtgtagttagctgattgctattaacaccaatcactagccacacagccagg 68
>RF00456;mir-34;AADN02058045.1/6075-5997 9031:Gallus gallus
(chicken)
Length = 79
Score = 69.9 bits (35), Expect = 3e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
||||||||||||||||||||||| | || |||||||||||||||||| ||||||
Sbjct: 13 aggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccagg 67
>RF00456;mir-34;ABQF01045704.1/20460-20539 59729:Taeniopygia
guttata
Length = 80
Score = 61.9 bits (31), Expect = 7e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
||||||||||||||||||||||| | || | ||||||||| |||||||||||||
Sbjct: 14 aggcagtgtagttagctgattgcccaaagcaacaatcactagccacacggccagg 68
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattg 22
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattg 22
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;AAWZ01034188.1/3307-3229 28377:Anolis carolinensis
(green anole)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattg 22
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattg 22
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattg 22
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aggcagtgtagttagctgattg 22
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
