miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
mouse)
Length = 72
Score = 93.7 bits (47), Expect = 2e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgaagtggacggcacaagctcgcttctatgggtctg 59
||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtggtgaagtggaccgcgcaagctcgtttctatgggtctg 66
>RF00104;mir-10;AADN02042927.1/15251-15322 9031:Gallus gallus
(chicken)
Length = 72
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgaagtggacggcacaagctcgcttctatgggtctg 59
|||||||||||||||||||||| |||| || || |||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatgggtctg 66
>RF00104;mir-10;ABQO010319844.1/337-408 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 69.9 bits (35), Expect = 3e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgaagtggacggcacaagctcgcttctatgggtctg 59
||||||||||||||||||||||||||| | ||| ||||||||||| ||| ||||||||
Sbjct: 8 aacccgtagatccgatcttgtggtgaaattgacttcacaagctcgcctctttgggtctg 66
>RF00104;mir-10;CR936972.7/90514-90443 7955:Danio rerio
(zebrafish)
Length = 72
Score = 60.0 bits (30), Expect = 3e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgaagtggacggcacaagctcgcttctatgggtct 58
|||||||||||||||||||||| | | | || |||||||||||| ||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtgataagtttgatggcacaagctcgattctatgggtct 65
>RF00104;mir-10;BAAF04093499.1/4658-4587 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 60.0 bits (30), Expect = 3e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgaagtggacggcacaagctcgcttctatgggtct 58
||||||||||||||||||||||| || |||||||||||||||| ||| |||||||
Sbjct: 8 aacccgtagatccgatcttgtggaaaatctgacggcacaagctcgcctctgtgggtct 65
>RF00104;mir-10;CAAK05023112.1/859-788 7955:Danio rerio
(zebrafish)
Length = 72
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtgg 23
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtgg 30
>RF00104;mir-10;AAPE01049372.1/3456-3524 59463:Myotis lucifugus
(little brown bat)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtga 26
||||||||||||||| ||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtga 33
>RF00104;mir-10;BX663520.9/232508-232577 7955:Danio rerio
(zebrafish)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtga 26
||||||||||||||| ||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtga 33
>RF00104;mir-10;BAAF04030492.1/777-846 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtga 26
||||||||||||||| ||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtga 33
>RF00104;mir-10;AALT01443654.1/2056-2125 42254:Sorex araneus
(European shrew)
Length = 70
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtg 25
||||||||||||||| |||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtg 32
>RF00104;mir-10;ABRQ01450213.1/964-1033 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtg 25
||||||||||||||| |||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtg 32
>RF00104;mir-10;BX284646.4/46761-46692 7955:Danio rerio
(zebrafish)
Length = 70
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtg 25
||||||||||||||| |||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtg 32
