miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AANU01118946.1/11450-11381 9544:Macaca mulatta
(rhesus monkey)
Length = 70
Score = 81.8 bits (41), Expect = 8e-16
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgatagtccacacaagcttgtgtctataggtatg 57
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtattagtccgcacaagcttgtgtctataggtatg 64
>RF00104;mir-10;BX663520.9/232508-232577 7955:Danio rerio
(zebrafish)
Length = 70
Score = 79.8 bits (40), Expect = 3e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgatagtccacacaagcttgtgtctataggtat 56
||||||||||||||| |||||||||| |||||||||||||||| |||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggtat 63
>RF00104;mir-10;ABRQ01450213.1/964-1033 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 73.8 bits (37), Expect = 2e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgatagtccacacaagcttgtgtctataggtatg 57
||||||||||||||| ||||||||| |||| ||||||||||||||||| | ||||||
Sbjct: 8 aacccgtagatccgaacttgtggtggtagttcacacaagcttgtgtctgtgggtatg 64
>RF00104;mir-10;ABQF01045478.1/2452-2521 59729:Taeniopygia guttata
Length = 70
Score = 67.9 bits (34), Expect = 1e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgatagtccacacaagcttgtgtctataggt 54
||||||||||||||| |||||| | ||| ||||||||||||||| |||||||||
Sbjct: 8 aacccgtagatccgaacttgtgctcatattccacacaagcttgtatctataggt 61
>RF00104;mir-10;AAHX01054266.1/78515-78584 10116:Rattus norvegicus
(Norway rat)
Length = 70
Score = 65.9 bits (33), Expect = 5e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgatagtccacacaagcttgtgtctataggtatg 57
||||||||||||||| |||||| ||| | ||||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgctgaccatgcacacaagcttgtgtctataggtatg 64
>RF00104;mir-10;AALT01443654.1/2056-2125 42254:Sorex araneus
(European shrew)
Length = 70
Score = 60.0 bits (30), Expect = 3e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgatagtccacacaagcttgtgtctataggt 54
||||||||||||||| ||||||||| | || |||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtgctcttctgcacaagcttgtgtctataggt 61
>RF00104;mir-10;ABQO010319844.1/337-408 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtga 26
||||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtggtga 33
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
mouse)
Length = 72
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtga 26
||||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtggtga 33
>RF00104;mir-10;AAPE01049372.1/3456-3524 59463:Myotis lucifugus
(little brown bat)
Length = 69
Score = 50.1 bits (25), Expect = 3e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtgatagtccacacaagcttgtgtctataggtatg 57
||||||||||||||| |||||||||| ||| |||||||| ||| |||| |||||||
Sbjct: 8 aacccgtagatccgaacttgtggtgacagt-cacacaagtttgcatctacaggtatg 63
>RF00104;mir-10;AAWZ01029956.1/4910-4979 28377:Anolis carolinensis
(green anole)
Length = 70
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 33 acacaagcttgtgtctataggtatg 57
|||||||||||||||||||||||||
Sbjct: 40 acacaagcttgtgtctataggtatg 64
>RF00104;mir-10;CAAK05023112.1/859-788 7955:Danio rerio
(zebrafish)
Length = 72
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtgg 23
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtgg 30
>RF00104;mir-10;BAAF04093499.1/4658-4587 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtgg 23
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtgg 30
>RF00104;mir-10;AADN02042927.1/15251-15322 9031:Gallus gallus
(chicken)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtg 29
>RF00104;mir-10;CR936972.7/90514-90443 7955:Danio rerio
(zebrafish)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtg 29
>RF00104;mir-10;BAAF04030492.1/777-846 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtga 26
||||||||||||||| ||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtga 33
>RF00104;mir-10;BX284646.4/46761-46692 7955:Danio rerio
(zebrafish)
Length = 70
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgatcttgtggtg 25
||||||||||||||| |||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtg 32
