miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 115 bits (58), Expect = 6e-26
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 1 agcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 68
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 99.6 bits (50), Expect = 3e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1 agcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 89.7 bits (45), Expect = 3e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 2 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 75.8 bits (38), Expect = 5e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 agcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctat 68
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 73.8 bits (37), Expect = 2e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 2 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
|||||||||||||| ||||||||| | || || ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagggctat 68
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 69.9 bits (35), Expect = 3e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 2 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggct 56
|||||| |||||||||||||||| || ||| | ||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 66
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 65.9 bits (33), Expect = 5e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 2 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
|||||| ||||||| |||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 65.9 bits (33), Expect = 5e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 2 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
|||||||||||||| |||||||| |||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 60.0 bits (30), Expect = 3e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 agcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
||||||||||||||| |||||||| || | | ||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggctat 68
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 60.0 bits (30), Expect = 3e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 agcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
||||||||||||||| || ||||| |||| | ||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 52.0 bits (26), Expect = 7e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 5 tctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
||||||| ||| |||||||||| || | ||||||||||||||||||||||||
Sbjct: 15 tctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 gttcaagcagcattgtacagggctat 58
||||||||||||||||||||||||||
Sbjct: 43 gttcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 52.0 bits (26), Expect = 7e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 5 tctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 58
||||||| ||| ||||||||||| | | ||||||||||||||||||||||||
Sbjct: 15 tctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggctat 68
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 gttcaagcagcattgtacagggctat 58
||||||||||||||||||||||||||
Sbjct: 43 gttcaagcagcattgtacagggctat 68
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 35 tcaagcagcattgtacagggctat 58
||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctat 68
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 35 tcaagcagcattgtacagggctat 58
||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctat 68
