miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 87.7 bits (44), Expect = 1e-17
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 1 tggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaa 56
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 9 tggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacactaaa 64
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 tggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaata 58
||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct: 9 tggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacactaaata 66
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 tggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaata 58
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 9 tggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacactaaata 66
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 atcaaacgccattatcacactaaata 58
||||||||||||||||||||||||||
Sbjct: 42 atcaaacgccattatcacactaaata 67
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 34 tcaaacgccattatcacactaaata 58
|||||||||||||||||||||||||
Sbjct: 43 tcaaacgccattatcacactaaata 67
