miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
(northern tree shrew)
Length = 88
Score = 129 bits (65), Expect = 4e-30
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 17
Query: 61 aagta 65
|||||
Sbjct: 16 aagta 12
>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 129 bits (65), Expect = 4e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 74
Query: 61 aagta 65
|||||
Sbjct: 75 aagta 79
>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 121 bits (61), Expect = 1e-27
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 13 ctttttgcggtctgggcttgctgttcctctcagcagtagtcaggaagcccttaccccaaa 72
Query: 61 aagta 65
|||||
Sbjct: 73 aagta 77
>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttaccccaaa 74
Query: 61 aagta 65
|||||
Sbjct: 75 aagta 79
>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttcctccagtcagcagtcaggaagcccttaccccaaa 74
Query: 61 aagta 65
|||||
Sbjct: 75 aagta 79
>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
(zebrafish)
Length = 92
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
|||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaaa 74
Query: 61 aagta 65
|||||
Sbjct: 75 aagta 79
>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
(zebrafish)
Length = 92
Score = 81.8 bits (41), Expect = 9e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
|||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttccttaaatcaccagtcaggaagcccttaccccaaa 74
Query: 61 aagta 65
|||||
Sbjct: 75 aagta 79
>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 73.8 bits (37), Expect = 2e-13
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
|||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttcctaagga-agtagccaggaagcccttaccccaaa 73
Query: 61 aagta 65
|||||
Sbjct: 74 aagta 78
>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
(ghost shark)
Length = 92
Score = 73.8 bits (37), Expect = 2e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
|||||||||||||||||||||||||||| | || | |||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttcctttgtccaacactcaggaagcccttaccccaaa 74
Query: 61 aagta 65
|||||
Sbjct: 75 aagta 79
>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio
(zebrafish)
Length = 89
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttc 26
||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttc 40
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ggaagcccttaccccaaaaag 63
|||||||||||||||||||||
Sbjct: 54 ggaagcccttaccccaaaaag 74
>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
(zebrafish)
Length = 91
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttc 26
||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttc 40
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ggaagcccttaccccaaaaag 63
|||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaag 76
>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
nigroviridis
Length = 90
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgttc 26
||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgtt 25
|||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgtt 39
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ggaagcccttaccccaaaaag 63
|||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaag 76
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
Length = 91
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgt 24
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ggaagcccttaccccaaaaag 63
|||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaag 76
>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
rubripes
Length = 87
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgt 24
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 caggaagcccttaccccaaaaag 63
|||||||||||||||||||||||
Sbjct: 50 caggaagcccttaccccaaaaag 72
>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgt 24
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgt 24
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ggaagcccttaccccaaaaag 63
|||||||||||||||||||||
Sbjct: 54 ggaagcccttaccccaaaaag 74
>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgctgt 24
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 caggaagcccttaccccaaaaag 63
|||||||||||||||||||||||
Sbjct: 51 caggaagcccttaccccaaaaag 73
>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 caggaagcccttaccccaaaaag 63
|||||||||||||||||||||||
Sbjct: 51 caggaagcccttaccccaaaaag 73
>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 ttttgcggtctgggcttgctgt 24
||||||||||||||||||||||
Sbjct: 16 ttttgcggtctgggcttgctgt 37
>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
Length = 93
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ctttttgcggtctgggcttgct 22
||||||||||||||||||||||
Sbjct: 16 ctttttgcggtctgggcttgct 37
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ggaagcccttaccccaaaaag 63
|||||||||||||||||||||
Sbjct: 58 ggaagcccttaccccaaaaag 78
