miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 107 bits (54), Expect = 1e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 gctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgttaaaagggc 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 12 gctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagggc 71
Query: 61 at 62
||
Sbjct: 72 at 73
>RF00258;mir-130;AAPN01026753.1/160-77 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 69.9 bits (35), Expect = 3e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1 gctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgt 51
|||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 12 gctcttttcacattgtgctactgtctgcgcccgtcactagcagtgcaatgt 62
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 60.0 bits (30), Expect = 3e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 1 gctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgttaaaagggc 60
||||||||||||||||||| ||||||| || | | ||||||||||||||||||||||
Sbjct: 12 gctcttttcacattgtgcttctgtctgtgcccgacccaagcagtgcaatgttaaaagggc 71
Query: 61 at 62
||
Sbjct: 72 at 73
>RF00258;mir-130;AL928914.15/23540-23459 10090:Mus musculus (house
mouse)
Length = 82
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gctcttttcacattgtgctactgtct 26
||||||||||||||||||||||||||
Sbjct: 12 gctcttttcacattgtgctactgtct 37
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 agcagtgcaatgttaaaagggcat 62
||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 agcagtgcaatgttaaaagggcat 62
||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 39 agcagtgcaatgttaaaagggcat 62
||||||||||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcat 10
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
guttata
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 agcagtgcaatgttaaaagggcat 62
||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcat 73
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 agcagtgcaatgttaaaagggcat 62
||||||||||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcat 70
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
(zebrafish)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 agcagtgcaatgttaaaagggcat 62
||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 gcagtgcaatgttaaaagggcat 62
|||||||||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcat 70
