miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 283 bits (143), Expect = 6e-76
Identities = 170/179 (94%)
Strand = Plus / Plus
Query: 32 ggtggaggaagagagctttctttggtccactcatggagtaatatgtgagatttaattgac 91
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtggaggaagagagctttcttcggtccactcatggagtaatatgtgagatttaattgac 60
Query: 92 tctcgactcatccatccacataccaaatgaaagaatatgttcccatatggtaaatgaatg 151
||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 61 tctcgactcattcatccaaataccaaatgaaagaatttgttctcatatggtaaatgaatg 120
Query: 152 aatgattctagagacaaattgaatctttacttctctatgcttggactgaagggagctcc 210
|||||| | ||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 121 aatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaagggagctcc 179
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 63.9 bits (32), Expect = 1e-09
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 143 aaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaag 202
|||||| |||||||| | ||||||||||||||||| | || |||| ||||||||||||
Sbjct: 114 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 173
Query: 203 ggagctcc 210
||||||||
Sbjct: 174 ggagctcc 181
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 40 aagagagctttctttggtccactcatgg 67
||||||||||||||| ||||||||||||
Sbjct: 9 aagagagctttctttagtccactcatgg 36
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 60.0 bits (30), Expect = 2e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 141 gtaaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactga 200
|||||||| |||||||| | ||||||||||| ||||| | || || ||||||||||||
Sbjct: 101 gtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactga 160
Query: 201 agggagctcc 210
||||||||||
Sbjct: 161 agggagctcc 170
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 58.0 bits (29), Expect = 6e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 113 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 172
Query: 202 gggagctcc 210
|||||||||
Sbjct: 173 gggagctcc 181
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 58.0 bits (29), Expect = 6e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctctgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 58.0 bits (29), Expect = 6e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 182 ttctctatgcttggactgaagggagctcctt 212
|||||| ||||||||||||||||||||||||
Sbjct: 151 ttctctgtgcttggactgaagggagctcctt 181
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 176 ctttacttctctatgcttggactgaagggagctcc 210
|||| ||||||| ||||||||||||||||||||||
Sbjct: 137 cttttcttctctgtgcttggactgaagggagctcc 171
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 54.0 bits (27), Expect = 1e-06
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 141 gtaaatgaatgaatgattctagagacaaattgaatcttta-cttctctatgcttggactg 199
|||||||| |||||||| | ||||||||||||||||| | |||| || | |||||||||
Sbjct: 141 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactg 199
Query: 200 aagggagctcc 210
|||||||||||
Sbjct: 200 aagggagctcc 210
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 181 cttctctatgcttggactgaagggagctcc 210
||||||| ||||||||||||||||||||||
Sbjct: 158 cttctctgtgcttggactgaagggagctcc 187
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 182 ttctctatgcttggactgaagggagctcc 210
||||||||| |||||||||||||||||||
Sbjct: 151 ttctctatgattggactgaagggagctcc 179
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 189 tgcttggactgaagggagctcctt 212
||||||||||||||||||||||||
Sbjct: 172 tgcttggactgaagggagctcctt 195
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 189 tgcttggactgaagggagctcctt 212
||||||||||||||||||||||||
Sbjct: 170 tgcttggactgaagggagctcctt 193
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 189 tgcttggactgaagggagctcctt 212
||||||||||||||||||||||||
Sbjct: 169 tgcttggactgaagggagctcctt 192
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 46.1 bits (23), Expect = 2e-04
Identities = 61/71 (85%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 141 gtaaatgaatgaatgattctagagacaaattgaatcttta-cttctctatgcttggactg 199
|||||||||||| |||| | |||||||||| |||||| | |||| |||| ||||||||
Sbjct: 106 gtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttc-ctatcattggactg 164
Query: 200 aagggagctcc 210
|||||||||||
Sbjct: 165 aagggagctcc 175
>RF00638;MIR159;AP006665.1/46415-46593 34305:Lotus japonicus
Length = 179
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 186 ctatgcttggactgaagggagctcctt 212
||||| |||||||||||||||||||||
Sbjct: 142 ctatgtttggactgaagggagctcctt 168
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 176 ctttacttctctatgcttggactgaagggagctcc 210
|||| ||| ||| ||||||||||||||||||||||
Sbjct: 146 cttttcttgtctgtgcttggactgaagggagctcc 180
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 189 tgcttggactgaagggagctcc 210
||||||||||||||||||||||
Sbjct: 164 tgcttggactgaagggagctcc 185
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 189 tgcttggactgaagggagctcc 210
||||||||||||||||||||||
Sbjct: 157 tgcttggactgaagggagctcc 178
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 189 tgcttggactgaagggagctcc 210
||||||||||||||||||||||
Sbjct: 164 tgcttggactgaagggagctcc 185
