miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/12681-12597 9031:Gallus gallus
(chicken)
Length = 85
Score = 137 bits (69), Expect = 3e-32
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 2 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagataa 61
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 1 ctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaa 60
Query: 62 ctatacgacctgctgcctttcttag 86
|||||| ||||||||||||||||||
Sbjct: 61 ctatacaacctgctgcctttcttag 85
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 8 agaggtagtaggttgcatagttttagggcagggattttgcccacaaggagataactatac 67
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 7 agaggtagtaggttgcatagtttgagggcagggattttgccccaaaggagataactatac 66
Query: 68 gacctgctgcctttc 82
||||||||||||||
Sbjct: 67 aacctgctgcctttc 81
>RF00027;let-7;ABRT010188166.1/5185-5269 9478:Tarsius syrichta
(Philippine tarsier)
Length = 85
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 10 aggtagtaggttgcatagttttagggcagggattttgcccacaaggagataactatacga 69
|||| |||||||||||||||||||||||| | ||||| |||| ||||| || ||||| ||
Sbjct: 9 aggttgtaggttgcatagttttagggcagcggttttgtccactaggaggtacctatatga 68
Query: 70 cctgctgcctttc 82
|||||||||||||
Sbjct: 69 cctgctgcctttc 81
>RF00027;let-7;ABGA01101244.1/3837-3924 9601:Pongo abelii
(Sumatran orangutan)
Length = 88
Score = 73.8 bits (37), Expect = 3e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 10 aggtagtaggttgcatagttttagggcagggattttgcccacaaggagataactatacga 69
||||||||||||||||||||| ||| |||||||||| |||| ||||||||| |||| ||
Sbjct: 9 aggtagtaggttgcatagtttgaggacagggattttatccactaggagataattatatga 68
Query: 70 cctgc 74
|||||
Sbjct: 69 cctgc 73
>RF00027;let-7;AANU01121567.1/12811-12727 9544:Macaca mulatta
(rhesus monkey)
Length = 85
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 10 aggtagtaggttgcatagttttagggcagggattttgcccacaaggagataactatacga 69
|||||||||||||| |||||| ||| |||||||||| |||||||||| ||| |||| ||
Sbjct: 9 aggtagtaggttgcctagtttgaggacagggattttatccacaaggaggtaattatatga 68
Query: 70 cctgctgcc 78
|||||||||
Sbjct: 69 cctgctgcc 77
>RF00027;let-7;ABDC01518424.1/1820-1902 30608:Microcebus murinus
(gray mouse lemur)
Length = 83
Score = 56.0 bits (28), Expect = 8e-08
Identities = 61/71 (85%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 16 taggttgcatagttttagggcagggattttgcccacaaggagataactatacgacctgct 75
|||||| | |||||| ||||||| ||||||| ||| |||| ||||||||| |||||||
Sbjct: 15 taggttacgtagtttcagggcagagattttgtccataaggt--taactatacaacctgct 72
Query: 76 gcctttcttag 86
|||||||||||
Sbjct: 73 gcctttcttag 83
>RF00027;let-7;AAGW01052945.1/1566-1484 9986:Oryctolagus cuniculus
(rabbit)
Length = 83
Score = 56.0 bits (28), Expect = 8e-08
Identities = 70/83 (84%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 2 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagataa 61
||||||||||| || ||| ||| |||| ||||||| |||||||| |||||| || |||
Sbjct: 1 ctaggaagaggcaggaggctgc--agttgcagggcagagattttgctcacaagaaggtaa 58
Query: 62 ctatacgacctgctgcctttctt 84
|| |||||||||| |||||||||
Sbjct: 59 ctctacgacctgcagcctttctt 81
>RF00027;let-7;AL162595.17/20369-20285 9606:Homo sapiens (human)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 2 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccac 51
||||||||||| | |||||||||||||| |||||||| ||||| |||||
Sbjct: 1 ctaggaagaggcaacaggttgcatagtttgagggcaggcatttttcccac 50
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 gaggtagtaggttgcatagttttaggg 35
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 gaggtagtaggttgcatagttttaggg 35
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 gaggtagtaggttgcatagttttaggg 35
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 62/74 (83%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 9 gaggtagtaggttgcatagttttagggcagggattttgcccaca--aggagataactata 66
|||||||||||||| |||||| |||| || |||||| || || ||||||||||||||
Sbjct: 8 gaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagataactata 67
Query: 67 cgacctgctgcctt 80
| |||| |||||||
Sbjct: 68 caacctactgcctt 81
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 gaggtagtaggttgcatagttttaggg 35
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
