miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
          mouse)
          Length = 77

 Score =  131 bits (66), Expect = 1e-30
 Identities = 72/74 (97%)
 Strand = Plus / Plus

                                                                      
Query: 3  ttgggaaacatacttctttatatgcccatatggacctgctaagctatggaatgtaaagaa 62
          |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3  ttgggacacatacttctttatatgcccatatgaacctgctaagctatggaatgtaaagaa 62

                        
Query: 63 gtatgtatttcagg 76
          ||||||||||||||
Sbjct: 63 gtatgtatttcagg 76




>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
          rock hyrax)
          Length = 77

 Score =  113 bits (57), Expect = 3e-25
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                      
Query: 4  tgggaaacatacttctttatatgcccatatggacctgctaagctatggaatgtaaagaag 63
          ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 4  tgggagacatacttctttataatcccatatggacctgctaagctatggaatgtaaagaag 63

                       
Query: 64 tatgtatttcagg 76
          ||||||| |||||
Sbjct: 64 tatgtatctcagg 76




>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
          (chicken)
          Length = 77

 Score =  103 bits (52), Expect = 3e-22
 Identities = 70/76 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcttgggaaacatacttctttatatgcccatatggacctgctaagctatggaatgtaaag 60
          ||||| || ||||||||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 1  gcttgagagacatacttctttatatgcccatatgaacctggcaatctatggaatgtaaag 60

                          
Query: 61 aagtatgtatttcagg 76
          ||||||||||||||||
Sbjct: 61 aagtatgtatttcagg 76




>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
          (American pika)
          Length = 77

 Score = 89.7 bits (45), Expect = 5e-18
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcttgggaaacatacttctttatatgcccatatggacctgctaagctatggaatgtaaag 60
          |||||||| ||||||||||||||| |||||||||||| ||||   |||||||||||||||
Sbjct: 1  gcttgggagacatacttctttatacgcccatatggacttgctgcactatggaatgtaaag 60

                   
Query: 61 aagtatgta 69
          |||||||||
Sbjct: 61 aagtatgta 69




>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
          (nine-banded armadillo)
          Length = 76

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 66/72 (91%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  gggaaacatacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagt 64
          |||| ||||||||||||||||||||||||||| || |  |||||||||||||||||||||
Sbjct: 5  gggagacatacttctttatatgcccatatggagct-cggagctatggaatgtaaagaagt 63

                      
Query: 65 atgtatttcagg 76
          |||||| |||||
Sbjct: 64 atgtatctcagg 75




>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
          (rhesus monkey)
          Length = 77

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                      
Query: 10 acatacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 69
          |||||||||||||| | |||||||| || | | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaaggctatggaatgtaaagaagtatgta 69

             
Query: 70 ttt 72
          |||
Sbjct: 70 ttt 72




>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
          tropicalis (western clawed frog)
          Length = 77

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                      
Query: 10 acatacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 69
          |||||||||||||| | |||||||| || | | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgta 69

             
Query: 70 ttt 72
          |||
Sbjct: 70 ttt 72




>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcttgggaaacatacttctttatatgcccatatggacctgctaagctatggaatgtaaag 60
          |||||||  ||||||||||||||||||||||||| ||  |   | |||||||||||||||
Sbjct: 1  gcttgggggacatacttctttatatgcccatatgaacacgagcaactatggaatgtaaag 60

                    
Query: 61 aagtatgtat 70
          ||||||||||
Sbjct: 61 aagtatgtat 70




>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
          (ghost shark)
          Length = 76

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 56/62 (90%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgtat 70
          |||||||||| ||||||||||||| |  ||||  ||||||||||||||||||||||||||
Sbjct: 11 catacttcttcatatgcccatatgaaa-tgctttgctatggaatgtaaagaagtatgtat 69

            
Query: 71 tt 72
          ||
Sbjct: 70 tt 71




>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
          (ghost shark)
          Length = 76

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 56/63 (88%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 acatacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 69
          |||||||||||||||| |||||||| || |   | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatatacccatatgaacttaaca-gctatggaatgtaaagaagtatgta 68

             
Query: 70 ttt 72
          |||
Sbjct: 69 ttt 71




>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
          Length = 78

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 57/64 (89%), Gaps = 3/64 (4%)
 Strand = Plus / Plus

                                                                      
Query: 10 acatacttctttatatgcccatatggacct--gctaagctatggaatgtaaagaagtatg 67
          |||||||||||||| | ||||||||||| |  | ||| ||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatggacatatgataa-ctatggaatgtaaagaagtatg 68

              
Query: 68 tatt 71
          ||||
Sbjct: 69 tatt 72




>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
          (Japanese medaka)
          Length = 78

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 43 aagctatggaatgtaaagaagtatgtatt 71
          |||||||||||||||||||||||||||||
Sbjct: 44 aagctatggaatgtaaagaagtatgtatt 72




>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
          (European shrew)
          Length = 77

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                      
Query: 10 acatacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 69
          |||||||||||||| | |||||||| || |   | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagtatgta 69




>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
          (cape rock hyrax)
          Length = 76

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 45 gctatggaatgtaaagaagtatgtattt 72
          ||||||||||||||||||||||||||||
Sbjct: 44 gctatggaatgtaaagaagtatgtattt 71




>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
          carolinensis (green anole)
          Length = 77

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                      
Query: 10 acatacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 69
          |||||||||||||| | |||||||| |  | | | | |||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaagatacaatgttatggaatgtaaagaagtatgta 69

             
Query: 70 ttt 72
          |||
Sbjct: 70 ttt 72




>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
          purpuratus
          Length = 80

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 46 ctatggaatgtaaagaagtatgtatt 71
          ||||||||||||||||||||||||||
Sbjct: 49 ctatggaatgtaaagaagtatgtatt 74




>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 76

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatggaatgtaaagaagtatgtat 70
          ||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgtat 69




>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
          spiralis
          Length = 75

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 47 tatggaatgtaaagaagtatgta 69
          |||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67




>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
          (southern root-knot nematode)
          Length = 93

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 47 tatggaatgtaaagaagtatgta 69
          |||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 85




>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
          japonica
          Length = 87

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 47 tatggaatgtaaagaagtatgta 69
          |||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79




>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
          remanei
          Length = 79

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 47 tatggaatgtaaagaagtatgta 69
          |||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71




>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
          briggsae
          Length = 79

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 47 tatggaatgtaaagaagtatgta 69
          |||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71




>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
          pacificus
          Length = 82

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 47 tatggaatgtaaagaagtatgta 69
          |||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74




>RF00103;mir-1;AAWZ01040028.1/1478-1399 28377:Anolis carolinensis
          (green anole)
          Length = 80

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 10 acatacttctttatatgcccatatgga 36
          ||||||||||| |||||||||||||||
Sbjct: 11 acatacttcttcatatgcccatatgga 37




>RF00103;mir-1;AADN02043827.1/39065-38987 9031:Gallus gallus
          (chicken)
          Length = 79

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 10 acatacttctttatatgcccatatgga 36
          ||||||||||| |||||||||||||||
Sbjct: 10 acatacttcttcatatgcccatatgga 36




>RF00103;mir-1;DQ066652.1/2-78 8364:Xenopus (Silurana) tropicalis
          (western clawed frog)
          Length = 77

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 acatacttctttatatgcccata 32
          |||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccata 32



 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 45 gctatggaatgtaaagaagtatgta 69
          |||||||||||| ||||||||||||
Sbjct: 45 gctatggaatgttaagaagtatgta 69




>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
          M
          Length = 79

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 46 ctatggaatgtaaagaagtatg 67
          ||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69




>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
          S
          Length = 79

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 46 ctatggaatgtaaagaagtatg 67
          ||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69




>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
          corporis (human body louse)
          Length = 74

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tatggaatgtaaagaagtatg 67
          |||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64




>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 95

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tatggaatgtaaagaagtatg 67
          |||||||||||||||||||||
Sbjct: 68 tatggaatgtaaagaagtatg 88




>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
          silkworm)
          Length = 75

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tatggaatgtaaagaagtatg 67
          |||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatg 65




>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 74

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tatggaatgtaaagaagtatg 67
          |||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64




>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
          bee)
          Length = 74

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tatggaatgtaaagaagtatg 67
          |||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64




>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 77

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tatggaatgtaaagaagtatg 67
          |||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67




>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
          grimshawi
          Length = 77

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tatggaatgtaaagaagtatg 67
          |||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67




>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
          mojavensis
          Length = 77

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tatggaatgtaaagaagtatg 67
          |||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67




>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
          (red flour beetle)
          Length = 74

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tatggaatgtaaagaagtatg 67
          |||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64




>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
          (black-legged tick)
          Length = 80

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tatggaatgtaaagaagtatg 67
          |||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatg 70