miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 tatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattctagg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4 tatataccctgtagaaccgaatttgtgtggtatccacgtagtcacagattcgattctagg 63
Query: 61 ggaatata 68
||||||||
Sbjct: 64 ggaatata 71
>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
Length = 75
Score = 79.8 bits (40), Expect = 4e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 1 tatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattctagg 60
||||||||||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct: 4 tatataccctgtagaaccgaatttgtgtgatggcgtcaaagtcacagattcgattctagg 63
Query: 61 ggaatata 68
||| ||||
Sbjct: 64 ggagtata 71
>RF00104;mir-10;AC145806.2/102674-102746 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 73
Score = 65.9 bits (33), Expect = 6e-11
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 5 taccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattctaggggaa 64
|||||||||||||||||||||||||| | | | ||||||||||||||||||||||| |
Sbjct: 8 taccctgtagaaccgaatttgtgtgg--ttcgtacagtcacagattcgattctaggggga 65
Query: 65 tata 68
||||
Sbjct: 66 tata 69
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tatataccctgtagaaccgaatttgtgtg 29
|||||||||||||||||||||||||||||
Sbjct: 4 tatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tatataccctgtagaaccgaatttgtgtg 29
|||||||||||||||||||||||||||||
Sbjct: 4 tatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tatataccctgtagaaccgaatttgtgt 28
||||||||||||||||||||||||||||
Sbjct: 4 tatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;ABPM01028404.1/870-945 106582:Maylandia zebra
(zebra mbuna)
Length = 76
Score = 52.0 bits (26), Expect = 9e-07
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 1 tatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattctagg 60
||||||||||||||||||||||| ||||| | || | |||||||||||||||||||
Sbjct: 4 tatataccctgtagaaccgaattggtgtgatgaaaccagattcacagattcgattctagg 63
Query: 61 gg 62
||
Sbjct: 64 gg 65
>RF00104;mir-10;AB232922.1/86430-86356 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 taccctgtagaaccgaatttgtgtgg 30
||||||||||||||||||||||||||
Sbjct: 8 taccctgtagaaccgaatttgtgtgg 33
>RF00104;mir-10;CAAB01001327.1/34126-34200 31033:Takifugu rubripes
Length = 75
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 taccctgtagaaccgaatttgtgtg 29
|||||||||||||||||||||||||
Sbjct: 8 taccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tatataccctgtagaaccgaatttgtgtg 29
||||||||||||||| |||||||||||||
Sbjct: 4 tatataccctgtagatccgaatttgtgtg 32
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tatataccctgtagaaccgaatttgtgt 28
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;BX546447.8/26541-26615 7955:Danio rerio
(zebrafish)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tatataccctgtagaaccgaatttgtgt 28
|||||||||||||||||||||| |||||
Sbjct: 4 tatataccctgtagaaccgaatgtgtgt 31
>RF00104;mir-10;BX005254.9/84183-84108 7955:Danio rerio
(zebrafish)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 taccctgtagaaccgaatttgtgt 28
||||||||||||||||||||||||
Sbjct: 8 taccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;EU025715.1/118732-118806 8030:Salmo salar
(Atlantic salmon)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 taccctgtagaaccgaatttgtgt 28
||||||||||||||||||||||||
Sbjct: 8 taccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tatataccctgtagaaccgaatttgtgt 28
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;FJ356145.1/1191-1265 8022:Oncorhynchus mykiss
(rainbow trout)
Length = 75
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 accctgtagaaccgaatttgtgt 28
|||||||||||||||||||||||
Sbjct: 9 accctgtagaaccgaatttgtgt 31
>RF00104;mir-10;BAAE01206467.1/1361-1287 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 ataccctgtagaaccgaatttgtgtgg 30
||||||||||||||||||| |||||||
Sbjct: 7 ataccctgtagaaccgaatgtgtgtgg 33
>RF00104;mir-10;AAWZ01028329.1/91871-91943 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 taccctgtagaaccgaatttgtgtg 29
|||||||||||| ||||||||||||
Sbjct: 8 taccctgtagaatcgaatttgtgtg 32
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 taccctgtagaaccgaatttgtgtg 29
||||||||||| |||||||||||||
Sbjct: 8 taccctgtagatccgaatttgtgtg 32
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 taccctgtagaaccgaatttgtgtg 29
||||||||||| |||||||||||||
Sbjct: 8 taccctgtagatccgaatttgtgtg 32
