miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;ABRQ01105896.1/793-873 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 117 bits (59), Expect = 2e-26
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagttaagattctaaaattatctccagtattaactgtgctg 69
Query: 61 ctg 63
|||
Sbjct: 70 ctg 72
>RF00254;mir-16;AADN02005381.1/19775-19853 9031:Gallus gallus
(chicken)
Length = 79
Score = 71.9 bits (36), Expect = 8e-13
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 67
Query: 61 ctg 63
|||
Sbjct: 68 ctg 70
>RF00254;mir-16;AANN01638158.1/2837-2759 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 69.9 bits (35), Expect = 3e-12
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60
|||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||
Sbjct: 10 tagcagcacgtaaatattggtgttaa-attctaag-ttatctccagtattgactgtgctg 67
Query: 61 ctg 63
|||
Sbjct: 68 ctg 70
>RF00254;mir-16;AANH01005347.1/82242-82163 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgttaaga 28
|||||||||||||||||||| |||||||
Sbjct: 10 tagcagcacgtaaatattggagttaaga 37
>RF00254;mir-16;ABQO011210750.1/1431-1352 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgt 23
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggcgt 32
>RF00254;mir-16;ABRQ01058087.1/3558-3638 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgt 23
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggcgt 32
>RF00254;mir-16;CAAB01000586.1/28233-28314 31033:Takifugu rubripes
Length = 82
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgttaag 27
|||||||||||||||||||| ||||||
Sbjct: 10 tagcagcacgtaaatattggagttaag 36
>RF00254;mir-16;BAAF04019869.1/1288-1368 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgt 23
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggcgt 32
>RF00254;mir-16;AAVX01576107.1/322-406 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgt 23
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggcgt 32
>RF00254;mir-16;ABPK01051643.1/651-732 57307:Labeotropheus
fuelleborni
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgttaa 26
|||||||||||||||||||| |||||
Sbjct: 10 tagcagcacgtaaatattggagttaa 35
>RF00254;mir-16;AAVX01075355.1/994-914 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tagcagcacgtaaatattggcgtta 25
|||||||||||||||||||| ||||
Sbjct: 10 tagcagcacgtaaatattggagtta 34
