miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
Length = 104
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 105 gagccgaaccaatatcactcttgtatgtttcttt 138
||||||||||||||||||||||||||| ||||||
Sbjct: 71 gagccgaaccaatatcactcttgtatgcttcttt 104
>RF00692;MIR171_2;AASG02011537.1/4995-5113 3988:Ricinus communis
(castor bean)
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 105 gagccgaaccaatatcactcttgtatgtttcttt 138
|||||||| |||||||||||||||||| ||||||
Sbjct: 86 gagccgaatcaatatcactcttgtatgcttcttt 119
>RF00692;MIR171_2;ABIM01001505.1/16686-16573 3649:Carica papaya
(papaya)
Length = 114
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 105 gagccgaaccaatatcactcttgtatgtttctt 137
|||||||| ||||||||||| ||||||||||||
Sbjct: 81 gagccgaatcaatatcactcctgtatgtttctt 113
>RF00692;MIR171_2;AARH01006308.1/48604-48716 3694:Populus
trichocarpa
Length = 113
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 105 gagccgaaccaatatcactcttgtatgtttctt 137
|||||||| |||||||||||||||||| |||||
Sbjct: 80 gagccgaatcaatatcactcttgtatgcttctt 112
>RF00692;MIR171_2;ABXC01002937.1/36819-36709 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 103 atgagccgaaccaatatcactcttgtat 130
|||||||||||||||||||||| |||||
Sbjct: 76 atgagccgaaccaatatcactcatgtat 103
>RF00692;MIR171_2;ABXC01004402.1/43379-43494 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 104 tgagccgaaccaatatcactcttgtat 130
||||||||||||||||||||| |||||
Sbjct: 82 tgagccgaaccaatatcactcatgtat 108
>RF00692;MIR171_2;AACV01010311.1/27668-27580 39947:Oryza sativa
Japonica Group
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 104 tgagccgaaccaatatcactcttgtat 130
||||||||||||||||||||| |||||
Sbjct: 55 tgagccgaaccaatatcactcatgtat 81
>RF00692;MIR171_2;EF424185.1/156-34 49314:Annona cherimola
Length = 123
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 105 gagccgaaccaatatcactcttgtat 130
|||||||| |||||||||||||||||
Sbjct: 90 gagccgaatcaatatcactcttgtat 115
>RF00692;MIR171_2;BABK01003433.1/149-44 34305:Lotus japonicus
Length = 106
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 103 atgagccgaaccaatatcactcttgt 128
|||||||||| |||||||||||||||
Sbjct: 71 atgagccgaatcaatatcactcttgt 96
