miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
          Length = 104

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 105 gagccgaaccaatatcactcttgtatgtttcttt 138
           ||||||||||||||||||||||||||| ||||||
Sbjct: 71  gagccgaaccaatatcactcttgtatgcttcttt 104




>RF00692;MIR171_2;AASG02011537.1/4995-5113 3988:Ricinus communis
           (castor bean)
          Length = 119

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 105 gagccgaaccaatatcactcttgtatgtttcttt 138
           |||||||| |||||||||||||||||| ||||||
Sbjct: 86  gagccgaatcaatatcactcttgtatgcttcttt 119




>RF00692;MIR171_2;ABIM01001505.1/16686-16573 3649:Carica papaya
           (papaya)
          Length = 114

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 105 gagccgaaccaatatcactcttgtatgtttctt 137
           |||||||| ||||||||||| ||||||||||||
Sbjct: 81  gagccgaatcaatatcactcctgtatgtttctt 113




>RF00692;MIR171_2;AARH01006308.1/48604-48716 3694:Populus
           trichocarpa
          Length = 113

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 105 gagccgaaccaatatcactcttgtatgtttctt 137
           |||||||| |||||||||||||||||| |||||
Sbjct: 80  gagccgaatcaatatcactcttgtatgcttctt 112




>RF00692;MIR171_2;ABXC01002937.1/36819-36709 4558:Sorghum bicolor
           (sorghum)
          Length = 111

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 103 atgagccgaaccaatatcactcttgtat 130
           |||||||||||||||||||||| |||||
Sbjct: 76  atgagccgaaccaatatcactcatgtat 103




>RF00692;MIR171_2;ABXC01004402.1/43379-43494 4558:Sorghum bicolor
           (sorghum)
          Length = 116

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 104 tgagccgaaccaatatcactcttgtat 130
           ||||||||||||||||||||| |||||
Sbjct: 82  tgagccgaaccaatatcactcatgtat 108




>RF00692;MIR171_2;AACV01010311.1/27668-27580 39947:Oryza sativa
           Japonica Group
          Length = 89

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 104 tgagccgaaccaatatcactcttgtat 130
           ||||||||||||||||||||| |||||
Sbjct: 55  tgagccgaaccaatatcactcatgtat 81




>RF00692;MIR171_2;EF424185.1/156-34 49314:Annona cherimola
          Length = 123

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 105 gagccgaaccaatatcactcttgtat 130
           |||||||| |||||||||||||||||
Sbjct: 90  gagccgaatcaatatcactcttgtat 115




>RF00692;MIR171_2;BABK01003433.1/149-44 34305:Lotus japonicus
          Length = 106

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 103 atgagccgaaccaatatcactcttgt 128
           |||||||||| |||||||||||||||
Sbjct: 71  atgagccgaatcaatatcactcttgt 96