miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 127 bits (64), Expect = 3e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 16 attagttttgcaggtttgcatttcagcgtatatatgtatatatggctgtgcaaatccatg 75
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 5 attagttttgcaggtttgcatttcagcgtatacctgtatacatggctgtgcaaatccatg 64
Query: 76 caaaactgattgtgat 91
||||||||||||||||
Sbjct: 65 caaaactgattgtgat 80
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 123 bits (62), Expect = 4e-28
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 12 tacgattagttttgcaggtttgcatttcagcgtatatatgtatatatggctgtgcaaatc 71
||||||||||||||||| |||||| |||||||||||| || |||||||||||||||||||
Sbjct: 1 tacgattagttttgcagatttgcagttcagcgtatatgtgaatatatggctgtgcaaatc 60
Query: 72 catgcaaaactgattgtg 89
||||||||||||||||||
Sbjct: 61 catgcaaaactgattgtg 78
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 117 bits (59), Expect = 3e-26
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 13 acgattagttttgcaggtttgcatttcagcgtatatatgtatatatggctgtgcaaatcc 72
|||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct: 2 acgattagttttgcaggtttgcatttcagcgtat-tgtgtatatcaggctgtgcaaatcc 60
Query: 73 atgcaaaactgattgtgat 91
|||||||||||||||||||
Sbjct: 61 atgcaaaactgattgtgat 79
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 109 bits (55), Expect = 7e-24
Identities = 73/78 (93%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 16 attagttttgcaggtttgcatttcagcgtatatatgtatata--tggctgtgcaaatcca 73
|||||||||||||||||||||||||||||||| || ||| || ||||||||||||||||
Sbjct: 5 attagttttgcaggtttgcatttcagcgtatagatatatctacatggctgtgcaaatcca 64
Query: 74 tgcaaaactgattgtgat 91
||||||||||||||||||
Sbjct: 65 tgcaaaactgattgtgat 82
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 103 bits (52), Expect = 4e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 16 attagttttgcaggtttgcatttcagcgtatatatgtatatatggctgtgcaaatccatg 75
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 5 attagttttgcaggtttgcatttcagcgtatatataaaggggtggctgtgcaaatccatg 64
Query: 76 caaaactgattgtgat 91
||||||||||||||||
Sbjct: 65 caaaactgattgtgat 80
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 101 bits (51), Expect = 2e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 17 ttagttttgcaggtttgcatttcagcgtatatatgtatatatggctgtgcaaatccatgc 76
||||||||||||||||||||||||||||||||| | || | ||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtatataaatctacagggctgtgcaaatccatgc 65
Query: 77 aaaactgattgtgat 91
|||||||| ||||||
Sbjct: 66 aaaactgactgtgat 80
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 99.6 bits (50), Expect = 6e-21
Identities = 68/73 (93%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 19 agttttgcaggtttgcatttcagcgtatatatgtatatatggctgtgcaaatccatgcaa 78
|||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||
Sbjct: 8 agttttgcaggtttgcatttcagc--atgtatttatgtatggctgtgcaaatccatgcaa 65
Query: 79 aactgattgtgat 91
|||||||||||||
Sbjct: 66 aactgattgtgat 78
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 17 ttagttttgcaggtttgcatttcagcgtatatatgtatatatggctgtgcaaatccatgc 76
||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtacttgtgcatatagggctgtgcaaatccatgc 65
Query: 77 aaaactga 84
||||||||
Sbjct: 66 aaaactga 73
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 81.8 bits (41), Expect = 1e-15
Identities = 67/75 (89%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 17 ttagttttgcaggtttgcatttcagcgtatatatgtatatatggctgtgcaaatccatgc 76
|||||||||||||||||||||||||| || | || ||| ||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcatacacata---atacggctgtgcaaatccatgc 62
Query: 77 aaaactgattgtgat 91
|||||||||||||||
Sbjct: 63 aaaactgattgtgat 77
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 6/68 (8%)
Strand = Plus / Plus
Query: 17 ttagttttgcaggtttgcatttcagcgtatatatgtatatatggctgtgcaaatccatgc 76
||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcattgcag----tatatg--tatatggctgtgcaaatccatgc 59
Query: 77 aaaactga 84
||||||||
Sbjct: 60 aaaactga 67
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgattgtg 74
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgatt 86
|||||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactgatt 68
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgatt 86
|||||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgatt 71
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||| ||||
Sbjct: 41 gctgtgcaaatccatgcaaaactgaatgtg 70
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||| ||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgactgtg 72
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||| ||||
Sbjct: 44 gctgtgcaaatccatgcaaaactgactgtg 73
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgat 85
||||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgat 68
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgat 85
||||||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaactgat 69
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactga 84
|||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactga 84
|||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactga 84
|||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactga 69
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaact 82
|||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaact 66
