miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;AAYZ01075783.1/3205-3279 9978:Ochotona princeps
(American pika)
Length = 75
Score = 115 bits (58), Expect = 8e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 ggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccaggg 60
|||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 2 ggctgcttggcttcctggcatgctgatttgtgacttcagattaaaacgacattgccaggg 61
Query: 61 attaccacgcaacc 74
||||||||||||||
Sbjct: 62 attaccacgcaacc 75
>RF00642;mir-23;AADN02067827.1/5868-5942 9031:Gallus gallus
(chicken)
Length = 75
Score = 111 bits (56), Expect = 1e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccaggg 60
||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 2 ggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccaggg 61
Query: 61 attaccac 68
||||||||
Sbjct: 62 attaccac 69
>RF00642;mir-23;AAPN01152921.1/1403-1329 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 109 bits (55), Expect = 5e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 1 ggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccaggg 60
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 ggctgcctgggttcctggcatgctgatttgtgacttaagagaaaaatcacattgccaggg 61
Query: 61 attaccacgca 71
|| ||||||||
Sbjct: 62 ataaccacgca 72
>RF00642;mir-23;AAVX01114775.1/823-749 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 99.6 bits (50), Expect = 5e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 8 tgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattacca 67
||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct: 9 tgggttcctggcatgctgatttgtgacatgagataaaaatcacattgccagggattacca 68
Query: 68 cg 69
||
Sbjct: 69 cg 70
>RF00642;mir-23;AAPY01550614.1/2244-2174 37347:Tupaia belangeri
(northern tree shrew)
Length = 71
Score = 95.6 bits (48), Expect = 7e-20
Identities = 66/70 (94%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 1 ggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccaggg 60
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 2 ggctgcttgggttcctggcatgctgatttgtgact--agat--aaatcacattgccaggg 57
Query: 61 attaccacgc 70
||||||||||
Sbjct: 58 attaccacgc 67
>RF00642;mir-23;BAAE01089507.1/636-563 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 87.7 bits (44), Expect = 2e-17
Identities = 57/60 (95%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 68
||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 10 gggttcctggcgtgctgatttgtgacttatgat-aaaatcacattgccagggattaccac 68
>RF00642;mir-23;CT027840.6/2697-2774 7955:Danio rerio (zebrafish)
Length = 78
Score = 60.0 bits (30), Expect = 4e-09
Identities = 56/64 (87%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 8 tgggttcctggcatgctgatttgtgacttaag---attaaaatcacattgccagggatta 64
||||||| |||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 9 tgggttcttggcatgctgatttgtgactgtagtaaaaaaaaatcacattgccagggatta 68
Query: 65 ccac 68
||||
Sbjct: 69 ccac 72
>RF00642;mir-23;AAVX01508943.1/286-212 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 taaaatcacattgccagggattacca 67
||||||||||||||||||||||||||
Sbjct: 43 taaaatcacattgccagggattacca 68
>RF00642;mir-23;AANN01357153.1/1425-1351 9365:Erinaceus europaeus
(western European hedgehog)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 aaatcacattgccagggattacca 67
||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggattacca 68
>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 aaaatcacattgccagggattaccac 68
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
(zebrafish)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 taaaatcacattgccagggatt 63
||||||||||||||||||||||
Sbjct: 43 taaaatcacattgccagggatt 64
>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 aaaatcacattgccagggattaccac 68
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 aaaatcacattgccagggattaccac 68
||||||||||||||||||||| ||||
Sbjct: 48 aaaatcacattgccagggatttccac 73
>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 aaaatcacattgccagggattaccac 68
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 aaaatcacattgccagggatt 63
|||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggatt 64
