miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00244;mir-26;AAGU02304058.1/2186-2113 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 147 bits (74), Expect = 3e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 6 tggctggattcaagtaatccaggataggctgtttccatctgtgaggcctattcttgatta 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctggattcaagtaatccaggataggctgtttccatctgtgaggcctattcttgatta 60
Query: 66 cttgtttctggagg 79
||||||||||||||
Sbjct: 61 cttgtttctggagg 74
>RF00244;mir-26;AAFR03065617.1/19793-19721 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 75.8 bits (38), Expect = 8e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgtttccatctgtgaggcctattcttgattacttgtttc 73
|||||||||||||||||||||||| |||| ||| | ||||||| ||||||| ||||||||
Sbjct: 9 ttcaagtaatccaggataggctgtgtccagctgcg-ggcctatccttgattgcttgtttc 67
Query: 74 tggagg 79
||||||
Sbjct: 68 tggagg 73
>RF00244;mir-26;AAWZ01020482.1/55030-55104 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 69.9 bits (35), Expect = 5e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgtttccat-ctgtgaggcctattcttgattacttgttt 72
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgttaccaggcagtacggcctattcttgattacttgttt 68
Query: 73 ctggagg 79
| |||||
Sbjct: 69 caggagg 75
>RF00244;mir-26;AAFR03041753.1/18045-17975 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgttt 39
||||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgttt 34
>RF00244;mir-26;AADN02000236.1/60671-60744 9031:Gallus gallus
(chicken)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgtttccat 43
|||||||||||||||||||||||| |||||
Sbjct: 9 ttcaagtaatccaggataggctgtatccat 38
>RF00244;mir-26;BAAF04021096.1/2358-2285 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgttt 39
||||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgttt 34
>RF00244;mir-26;CAAB01005025.1/9613-9686 31033:Takifugu rubripes
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgtttccatctgtgaggcctattcttgattacttgt 70
||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctggttaaccctgcacggcctattcttgattacttgt 65
>RF00244;mir-26;BAAE01056802.1/2019-1945 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgtttccatctgtga-ggcctattcttgattacttgttt 72
||||||||||||||||||||||| || ||| | |||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctggttaacactggcacggcctattcttgattacttgttt 68
Query: 73 c 73
|
Sbjct: 69 c 69
>RF00244;mir-26;BAAE01145746.1/1134-1208 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgtttccatctg-tgaggcctattcttgattacttg 69
|||||||||||||||||||||| | | |||||| | ||||||| ||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctttctgcatctgatttggcctatacttgattacttg 65
>RF00244;mir-26;AAPN01108773.1/2160-2090 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgt 37
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAPN01398538.1/2438-2512 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgt 37
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAIY01565150.1/1351-1424 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgt 37
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAWZ01023535.1/24478-24552 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgt 37
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAWZ01018052.1/16808-16735 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgt 37
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;CAAE01014542.1/1090180-1090107 99883:Tetraodon
nigroviridis
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgt 37
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AANH01008588.1/20720-20793 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgt 37
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAVX01037532.1/3546-3619 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgt 37
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAFR03066353.1/7590-7517 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 74
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctg 36
|||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctg 31
>RF00244;mir-26;BX957326.8/213855-213781 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggctgtttccatct-gtgaggcctattcttgattacttgttt 72
|||||||||||||||||||| | |||| || || |||||||||||| ||||||||||
Sbjct: 9 ttcaagtaatccaggataggttagttcccactagtacggcctattcttggttacttgttt 68
Query: 73 ctggagg 79
| |||||
Sbjct: 69 caggagg 75
>RF00244;mir-26;CAAE01014737.1/605161-605232 99883:Tetraodon
nigroviridis
Length = 72
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 ctggattcaagtaatccaggataggct 35
|||| ||||||||||||||||||||||
Sbjct: 4 ctgggttcaagtaatccaggataggct 30
>RF00244;mir-26;BX322540.5/61735-61662 7955:Danio rerio
(zebrafish)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggct 35
||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggct 30
>RF00244;mir-26;CR388015.14/128267-128194 7955:Danio rerio
(zebrafish)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggct 35
||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggct 30
>RF00244;mir-26;CAAE01014553.1/1193335-1193409 99883:Tetraodon
nigroviridis
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 gattcaagtaatccaggatagg 33
||||||||||||||||||||||
Sbjct: 7 gattcaagtaatccaggatagg 28
>RF00244;mir-26;AC098806.3/13416-13344 31033:Takifugu rubripes
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggct 35
||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggct 30
>RF00244;mir-26;AANH01007655.1/107291-107217 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggct 35
||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggct 30
>RF00244;mir-26;AANH01005795.1/17049-17122 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ttcaagtaatccaggataggct 35
||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggct 30
