miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;ABRQ01065900.1/2710-2791 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 129 bits (65), Expect = 5e-30
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 5 ggagcagggcttagctgcttgtgagcagggtccacaccgagtcatgttcacagtggctaa 64
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 9 ggagcagggcttagctgcttgtgagcagggtccacaccaagtcgtgttcacagtggctaa 68
Query: 65 gttccgccccccg 77
|||||||||||||
Sbjct: 69 gttccgccccccg 81
>RF00644;mir-27;AANN01357153.1/1239-1159 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 95.6 bits (48), Expect = 8e-20
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 ctggggagcagggcttagctgcttgtgagcagggtccacaccgagtcatgttcacagtgg 60
||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||
Sbjct: 5 ctggggagcagggcttagctgctggtgaacagggtgt-caccgagtcttgttcacagtgg 63
Query: 61 ctaagttccgcccccc 76
||||||||||||||||
Sbjct: 64 ctaagttccgcccccc 79
>RF00644;mir-27;AAPY01721327.1/686-605 37347:Tupaia belangeri
(northern tree shrew)
Length = 82
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 5 ggagcagggcttagctgcttgtgagcagggtccacaccgagtcatgttcacagtggctaa 64
|||||||||||||||||||||||||||| ||||||||| || || ||||||||||||
Sbjct: 9 ggagcagggcttagctgcttgtgagcagcgtccacaccaagctgtgctcacagtggctac 68
Query: 65 gttc 68
||||
Sbjct: 69 gttc 72
>RF00644;mir-27;ABRO01400204.1/542-621 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 65.9 bits (33), Expect = 7e-11
Identities = 63/72 (87%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 5 ggagcagggcttagctgcttgtgagcagggtccacaccgagtcatgttcacagtggctaa 64
||||||||||||||| |||||||||||||| |||| | |||||||||||||||||
Sbjct: 9 ggagcagggcttagccacttgtgagcagggtttctaccgtg--atgttcacagtggctaa 66
Query: 65 gttccgcccccc 76
||||||||||||
Sbjct: 67 gttccgcccccc 78
>RF00644;mir-27;AAPN01322484.1/470-549 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 tgttcacagtggctaagttccgcccc 74
||||||||||||||||||||||||||
Sbjct: 51 tgttcacagtggctaagttccgcccc 76
>RF00644;mir-27;AAWZ01000886.1/15608-15527 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 catgttcacagtggctaagttccgc 71
|||||||||||||||||||||||||
Sbjct: 51 catgttcacagtggctaagttccgc 75
>RF00644;mir-27;AAFR03052006.1/45216-45298 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 tgttcacagtggctaagttccgcccccc 76
||||||||||||||||||||||| ||||
Sbjct: 54 tgttcacagtggctaagttccgctcccc 81
>RF00644;mir-27;BX664751.9/57144-57062 7955:Danio rerio
(zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 atgttcacagtggctaagttccgc 71
||||||||||||||||||||||||
Sbjct: 53 atgttcacagtggctaagttccgc 76
>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 atgttcacagtggctaagttccgc 71
||||||||||||||||||||||||
Sbjct: 56 atgttcacagtggctaagttccgc 79
>RF00644;mir-27;CAAB01002712.1/1229-1146 31033:Takifugu rubripes
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tgttcacagtggctaagttccgc 71
|||||||||||||||||||||||
Sbjct: 55 tgttcacagtggctaagttccgc 77
>RF00644;mir-27;ABPM01053951.1/750-668 106582:Maylandia zebra
(zebra mbuna)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tgttcacagtggctaagttccgc 71
|||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccgc 76
>RF00644;mir-27;AANH01005378.1/81241-81159 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tgttcacagtggctaagttccgc 71
|||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccgc 76
>RF00644;mir-27;BAAE01159437.1/1557-1475 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tgttcacagtggctaagttccgc 71
|||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccgc 76
