miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;ABRQ01173586.1/2990-2912 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 125 bits (63), Expect = 7e-29
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 66
Query: 61 gccatct 67
|||||||
Sbjct: 67 gccatct 73
>RF00661;mir-31;AAWZ01002824.1/52915-52993 28377:Anolis
carolinensis (green anole)
Length = 79
Score = 77.8 bits (39), Expect = 1e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 1 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 60
|||| |||||||||||| ||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 7 ggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatatt 66
Query: 61 gcc 63
|||
Sbjct: 67 gcc 69
>RF00661;mir-31;AC189661.2/146363-146285 9031:Gallus gallus
(chicken)
Length = 79
Score = 77.8 bits (39), Expect = 1e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 1 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 60
|||| |||||||||||| ||||||||||||| | || | |||||||||||||||||||||
Sbjct: 7 ggaggggaggcaagatgttggcatagctgttaacctaaaaacctgctatgccaacatatt 66
Query: 61 gccatct 67
| |||||
Sbjct: 67 gtcatct 73
>RF00661;mir-31;AAPN01033181.1/1752-1830 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 60
|||||| |||||||||| ||||||||||||||| | ||||||||||||||| |||| ||
Sbjct: 7 ggagagaaggcaagatgttggcatagctgttgagttaagaacctgctatgccgacatgtt 66
Query: 61 gccatct 67
| |||||
Sbjct: 67 gtcatct 73
>RF00661;mir-31;CAAE01014681.1/977367-977288 99883:Tetraodon
nigroviridis
Length = 80
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ggagaggaggcaagatgctggcatagctg 29
|||||||||||||||||||||||||||||
Sbjct: 7 ggagaggaggcaagatgctggcatagctg 35
>RF00661;mir-31;AANH01007167.1/95060-94981 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 46.1 bits (23), Expect = 5e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 8 aggcaagatgctggcatagctgttgaactgaga-acctgctatgccaacatattgccat 65
|||||||||| ||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgttaaattgaaatccctgctatatcaacatattgccat 72
>RF00661;mir-31;BAAE01170693.1/1745-1803 8090:Oryzias latipes
(Japanese medaka)
Length = 59
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 ggcaagatgctggcatagctgttgaa 34
||||||||| ||||||||||||||||
Sbjct: 1 ggcaagatgttggcatagctgttgaa 26
