miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAKN02045137.1/14420-14354 10141:Cavia porcellus
(domestic guinea pig)
Length = 67
Score = 103 bits (52), Expect = 2e-22
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 1 gtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgca 56
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6 gtgcattgctgttgcattgcatgtgtgtgaggcgggtgcagtgcctcggcagtgca 61
>RF00667;mir-33;AAGU02562745.1/2088-2024 9785:Loxodonta africana
(African savanna elephant)
Length = 65
Score = 81.8 bits (41), Expect = 7e-16
Identities = 53/56 (94%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 1 gtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgca 56
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 6 gtgcattgctgttgcattgcacgtgtgt--ggcgggtgcagtgcctcagcagtgca 59
>RF00667;mir-33;AAIY01371081.1/711-777 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 71.9 bits (36), Expect = 7e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 1 gtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgca 56
||||||||| ||||||||||||||||||| | | |||||||||| |||||||||||
Sbjct: 6 gtgcattgcggttgcattgcacgtgtgtgcgccaggtgcagtgcttcggcagtgca 61
>RF00667;mir-33;AAYZ01315512.1/404-338 9978:Ochotona princeps
(American pika)
Length = 67
Score = 69.9 bits (35), Expect = 3e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 2 tgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgca 56
|||||||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 7 tgcattgctggtgcattgcacgtgtgcgcagcaggtgcagtgcctcggcagtgca 61
>RF00667;mir-33;AAQQ01305246.1/1096-1158 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 63
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/55 (90%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 2 tgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgca 56
|||||||||| ||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct: 5 tgcattgctgctgcattgcacgcgtgtg--gcgggtgcagtgcctcagcagtgca 57
