miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AADN02040793.1/20235-20325 9031:Gallus gallus
(chicken)
Length = 91
Score = 93.7 bits (47), Expect = 2e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgcgggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 14 tggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcagcaagtatact 73
Query: 61 gcc 63
|||
Sbjct: 74 gcc 76
>RF00456;mir-34;AANH01002669.1/122646-122735 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 61.9 bits (31), Expect = 8e-10
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtgagtaatagtgcgggaagcaatcagcaagtatact 60
|||||||||||||||||||||||||||| | | | | |||||||||||||||||||||
Sbjct: 14 tggcagtgtcttagctggttgttgtgaggagt-gagaacgaagcaatcagcaagtatact 72
Query: 61 gcc 63
|||
Sbjct: 73 gcc 75
>RF00456;mir-34;AAVX01252978.1/732-820 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tggcagtgtcttagctggttgttgtg 26
||||||||||||||||||||||||||
Sbjct: 14 tggcagtgtcttagctggttgttgtg 39
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 aagcaatcagcaagtatactgcc 63
|||||||||||||||||||||||
Sbjct: 52 aagcaatcagcaagtatactgcc 74
