miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AANU01118946.1/11450-11381 9544:Macaca mulatta
(rhesus monkey)
Length = 70
Score = 85.7 bits (43), Expect = 5e-17
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtgatagtccacacaagcttgtgtctataggta 55
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtattagtccgcacaagcttgtgtctataggta 62
>RF00104;mir-10;BX663520.9/232508-232577 7955:Danio rerio
(zebrafish)
Length = 70
Score = 85.7 bits (43), Expect = 5e-17
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtgatagtccacacaagcttgtgtctataggta 55
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggta 62
>RF00104;mir-10;ABRQ01450213.1/964-1033 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 79.8 bits (40), Expect = 3e-15
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtgatagtccacacaagcttgtgtct 48
||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtggtagttcacacaagcttgtgtct 55
>RF00104;mir-10;ABQF01045478.1/2452-2521 59729:Taeniopygia guttata
Length = 70
Score = 75.8 bits (38), Expect = 4e-14
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtgatagtccacacaagcttgtgtctataggt 54
|||||||||||||||||||||| | ||| ||||||||||||||| |||||||||
Sbjct: 8 aacccgtagatccgaacttgtgctcatattccacacaagcttgtatctataggt 61
>RF00104;mir-10;AAHX01054266.1/78515-78584 10116:Rattus norvegicus
(Norway rat)
Length = 70
Score = 69.9 bits (35), Expect = 3e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtgatagtccacacaagcttgtgtctataggta 55
|||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgctgaccatgcacacaagcttgtgtctataggta 62
>RF00104;mir-10;AALT01443654.1/2056-2125 42254:Sorex araneus
(European shrew)
Length = 70
Score = 67.9 bits (34), Expect = 1e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtgatagtccacacaagcttgtgtctataggt 54
||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtgctcttctgcacaagcttgtgtctataggt 61
>RF00104;mir-10;AAPE01049372.1/3456-3524 59463:Myotis lucifugus
(little brown bat)
Length = 69
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtgatagtc 31
|||||||||||||||||||||||||| ||||
Sbjct: 8 aacccgtagatccgaacttgtggtgacagtc 38
>RF00104;mir-10;AAWZ01029956.1/4910-4979 28377:Anolis carolinensis
(green anole)
Length = 70
Score = 54.0 bits (27), Expect = 2e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtgatagtccacacaagcttgtgtctataggta 55
|||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgcttctatgttacacaagcttgtgtctataggta 62
>RF00104;mir-10;BAAF04030492.1/777-846 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 52.0 bits (26), Expect = 6e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtga 26
||||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtga 33
>RF00104;mir-10;BX284646.4/46761-46692 7955:Danio rerio
(zebrafish)
Length = 70
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtg 25
|||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtggtg 32
>RF00104;mir-10;AADG05003176.1/74572-74649 7460:Apis mellifera
(honey bee)
Length = 78
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtgg 23
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgg 30
>RF00104;mir-10;AAJJ01000960.1/12300-12233 7070:Tribolium
castaneum (red flour beetle)
Length = 68
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtgg 23
|||||||||||||||||||||||
Sbjct: 7 aacccgtagatccgaacttgtgg 29
>RF00104;mir-10;ABIR01000029.1/41879-41953 6334:Trichinella
spiralis
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAQA01000457.1/25556-25481 6279:Brugia malayi
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABAV01011074.1/24648-24715 45351:Nematostella
vectensis (starlet sea anemone)
Length = 68
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 acccgtagatccgaacttgtgg 23
||||||||||||||||||||||
Sbjct: 9 acccgtagatccgaacttgtgg 30
>RF00104;mir-10;ABQO010319844.1/337-408 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtga 26
||||||||||||||| ||||||||||
Sbjct: 8 aacccgtagatccgatcttgtggtga 33
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
mouse)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtggtga 26
||||||||||||||| ||||||||||
Sbjct: 8 aacccgtagatccgatcttgtggtga 33
>RF00104;mir-10;CAAB01004143.1/16784-16858 31033:Takifugu rubripes
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;BAAF04027544.1/3636-3567 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABEP02005607.1/34557-34626 7739:Branchiostoma
floridae (Florida lancelet)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAWU01000325.1/1900-1975 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAGE02002929.1/307465-307539 7159:Aedes aegypti
(yellow fever mosquito)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAAB01008964.1/2125227-2125303 180454:Anopheles
gambiae str. PEST
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABJB010963031.1/703-629 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aacccgtagatccgaacttgtg 22
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAZO01005184.1/23040-23119 121224:Pediculus
humanus corporis (human body louse)
Length = 80
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 acccgtagatccgaacttgtg 22
|||||||||||||||||||||
Sbjct: 9 acccgtagatccgaacttgtg 29
>RF00104;mir-10;ABLF01019923.1/4047-3973 7029:Acyrthosiphon pisum
(pea aphid)
Length = 75
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 acccgtagatccgaacttgtg 22
|||||||||||||||||||||
Sbjct: 9 acccgtagatccgaacttgtg 29
