miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00253;mir-101;AADN02066347.1/1501-1427 9031:Gallus gallus
(chicken)
Length = 75
Score = 119 bits (60), Expect = 5e-27
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1 cctttttcggttatcatggtaccgatgctgtatatctgaaaggtacagtactgtgataac 60
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 4 cctttttcggttatcatggtaccggtgctgtatacgtgaaaggtacagtactgtgataac 63
Query: 61 tgaagaatggtg 72
||||||||||||
Sbjct: 64 tgaagaatggtg 75
>RF00253;mir-101;AC120147.8/122464-122390 10090:Mus musculus
(house mouse)
Length = 75
Score = 115 bits (58), Expect = 7e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1 cctttttcggttatcatggtaccgatgctgtatatctgaaaggtacagtactgtgataac 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 4 cctttttcggttatcatggtaccgatgctgtagctctgaaaggtacagtactgtgatagc 63
Query: 61 tgaagaatgg 70
||||||||||
Sbjct: 64 tgaagaatgg 73
>RF00253;mir-101;AADN02012457.1/2688-2762 9031:Gallus gallus
(chicken)
Length = 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 39 aaaggtacagtactgtgataactgaagaatgg 70
||||||||||||||||||||||||||| ||||
Sbjct: 42 aaaggtacagtactgtgataactgaaggatgg 73
>RF00253;mir-101;BAAF04077052.1/5406-5332 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 40 aaggtacagtactgtgataactgaagaatgg 70
|||||||||||||||||||||||||| ||||
Sbjct: 43 aaggtacagtactgtgataactgaaggatgg 73
>RF00253;mir-101;AAVX01090491.1/533-606 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 aggtacagtactgtgataactgaaga 66
|||||||||||||||||| |||||||
Sbjct: 43 aggtacagtactgtgatagctgaaga 68
