miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 145 bits (73), Expect = 9e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 6 ctttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ctttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggc 65
Query: 66 tatgaaagaacca 78
|||||||||||||
Sbjct: 66 tatgaaagaacca 78
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 123 bits (62), Expect = 3e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 3 gtgctttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacag 62
|||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 3 gtgctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacag 62
Query: 63 ggctatgaaagaac 76
||||||||||||||
Sbjct: 63 ggctatgaaagaac 76
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 101 bits (51), Expect = 1e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 7 tttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggct 66
|||||||||||||||||||||| |||||||||| | | ||||||||||||||||||||||
Sbjct: 7 tttcagcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggct 66
Query: 67 atgaaag 73
|||||||
Sbjct: 67 atgaaag 73
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 4 tgctttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagg 63
|||||||||||||||||||||| |||||||| |||| || |||||||||||||||||||
Sbjct: 4 tgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagg 63
Query: 64 gctatgaaag 73
||||| ||||
Sbjct: 64 gctatcaaag 73
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 12 gcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctatgaa 71
||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 75.8 bits (38), Expect = 7e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 2 cgtgctttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtaca 61
||||| ||| ||||||||||||||||||||||| | | || |||||||||||||||||
Sbjct: 2 cgtgccttcggcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtaca 61
Query: 62 gggctatgaa 71
||||||||||
Sbjct: 62 gggctatgaa 71
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 75.8 bits (38), Expect = 7e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 12 gcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctatgaa 71
|||||||||||||| ||||||||||| | || |||||||||||||||||||||||| ||
Sbjct: 12 gcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctatcaa 71
Query: 72 ag 73
||
Sbjct: 72 ag 73
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 69.9 bits (35), Expect = 4e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 12 gcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctatga 70
|||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 11 agcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctat 68
||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 8 ttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggcta 67
|||||| ||||||| |||||||||||| || | | |||||||||||||||||||||||
Sbjct: 8 ttcagcctctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggcta 67
Query: 68 tgaa 71
||||
Sbjct: 68 tgaa 71
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 5 gctttcagcttctttacagtgctgccttgtagcattcaggt-caagcagcattgtacagg 63
||||| ||| |||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 5 gcttttagcctctttacagtgctgccttgtctgat-caggttcaagcagcattgtacagg 63
Query: 64 gctatga 70
|||||||
Sbjct: 64 gctatga 70
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 9 tcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctat 68
||||| ||||||| |||||||||||| | || | ||||||||||||||||||||||||
Sbjct: 9 tcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctat 68
Query: 69 ga 70
||
Sbjct: 69 ga 70
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 60.0 bits (30), Expect = 4e-09
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 5 gctttcagcttctttacagtgctgccttgtagcattcagg-tcaagcagcattgtacagg 63
||||| ||| |||||||| ||||||||||||| | ||| |||||||||||||||||||
Sbjct: 5 gctttgagcctctttacaatgctgccttgtag-acccagaatcaagcagcattgtacagg 63
Query: 64 gctatgaaag 73
||||||||||
Sbjct: 64 gctatgaaag 73
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 12 gcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggct 66
|||||| ||||||| ||||||||||| | | ||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 66
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 tcaagcagcattgtacagggctatgaa 71
|||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 tcaagcagcattgtacagggctatga 70
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
